Variant report

Variant	rs72716665
Chromosome Location	chr14:55577913-55577914
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55577758..55579306-chr14:55580638..55583471,2	MCF-7	breast:
2	chr14:55577226..55578815-chr14:55585126..55587716,2	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs17128147	0.86[EUR][1000 genomes]
rs35954941	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58481989	0.86[EUR][1000 genomes]
rs72715588	0.86[EUR][1000 genomes]
rs72715590	0.86[EUR][1000 genomes]
rs72715591	0.86[EUR][1000 genomes]
rs72715592	0.86[EUR][1000 genomes]
rs72715705	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72715707	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72715716	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72715743	1.00[AMR][1000 genomes]
rs72715749	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72715750	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72715752	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72715756	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72715758	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72715763	1.00[AMR][1000 genomes]
rs72715765	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72715773	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72715777	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72715782	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72715784	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716642	0.86[EUR][1000 genomes]
rs72716643	0.86[EUR][1000 genomes]
rs72716648	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716652	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716654	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716661	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716663	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72716666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72716668	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72716676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72716677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72716678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72716681	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72716688	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72716690	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72716692	1.00[EUR][1000 genomes]
rs72716698	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718806	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718810	1.00[EUR][1000 genomes]
rs72718813	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718815	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718818	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718819	1.00[AMR][1000 genomes]
rs72718821	1.00[AMR][1000 genomes]
rs72718822	1.00[AMR][1000 genomes]
rs72718824	1.00[AMR][1000 genomes]
rs72718831	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72718835	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72718837	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72718840	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72718843	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72718844	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72718845	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72718846	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72718847	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72718850	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72718856	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55570000-55594800	Enhancers	Fetal Intestine Large	intestine
2	chr14:55575000-55589600	Weak transcription	Small Intestine	intestine
3	chr14:55575200-55581600	Weak transcription	Pancreas	Pancrea
4	chr14:55575200-55581600	Weak transcription	Spleen	Spleen
5	chr14:55575200-55582000	Weak transcription	Right Ventricle	heart
6	chr14:55575200-55582200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr14:55575200-55582200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr14:55575200-55583000	Weak transcription	Gastric	stomach
9	chr14:55575200-55584400	Weak transcription	Esophagus	oesophagus
10	chr14:55575400-55580600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr14:55575400-55581400	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr14:55575400-55582200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr14:55575600-55578000	Weak transcription	Fetal Muscle Trunk	muscle
14	chr14:55575600-55584600	Weak transcription	Ovary	ovary
15	chr14:55575800-55584800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr14:55576000-55578600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr14:55576200-55581600	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr14:55576400-55580200	Weak transcription	HepG2	liver
19	chr14:55576400-55582200	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr14:55576800-55582200	Weak transcription	K562	blood
21	chr14:55576800-55582800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr14:55576800-55584400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr14:55577600-55578200	Enhancers	HSMMtube	muscle
24	chr14:55577600-55578400	Enhancers	Fetal Muscle Leg	muscle
25	chr14:55577600-55594800	Enhancers	Fetal Intestine Small	intestine
26	chr14:55577800-55578000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr14:55577800-55578000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr14:55577800-55578000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr14:55577800-55578200	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr14:55577800-55578200	Enhancers	Placenta Amnion	Placenta Amnion
31	chr14:55577800-55578200	Enhancers	Sigmoid Colon	Sigmoid Colon
32	chr14:55577800-55578400	Enhancers	Rectal Mucosa Donor 31	rectum

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