Variant report

Variant	rs72715777
Chromosome Location	chr14:55771359-55771360
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55769063..55771511-chr14:55775759..55777879,2	K562	blood:
2	chr14:55764599..55767496-chr14:55770496..55772539,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258469	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs35342573	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35954941	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67626275	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715705	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715707	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715716	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715735	0.86[EUR][1000 genomes]
rs72715743	1.00[AMR][1000 genomes]
rs72715749	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715750	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715752	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715756	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715758	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715763	1.00[AMR][1000 genomes]
rs72715765	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715773	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715782	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715784	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715789	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715791	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715792	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715794	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72716661	0.83[AMR][1000 genomes]
rs72716663	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716665	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716666	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716668	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716676	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716677	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716678	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716681	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716688	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716690	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716692	0.86[EUR][1000 genomes]
rs72716698	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72717703	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717705	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717706	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717707	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717708	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717713	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72717715	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717720	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717725	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717733	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717736	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717743	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717746	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717748	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717749	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717754	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717756	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717758	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717766	0.83[AMR][1000 genomes]
rs72717777	0.86[EUR][1000 genomes]
rs72718806	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72718810	0.86[EUR][1000 genomes]
rs72718813	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72718815	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72718818	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72718819	1.00[AMR][1000 genomes]
rs72718821	1.00[AMR][1000 genomes]
rs72718822	1.00[AMR][1000 genomes]
rs72718824	1.00[AMR][1000 genomes]
rs72718831	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718835	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718837	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718840	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718843	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718844	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718845	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718846	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718847	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718850	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718856	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039438	chr14:55746585-55886099	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55741000-55773200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr14:55745000-55774000	Weak transcription	Liver	Liver
3	chr14:55745200-55778400	Weak transcription	Fetal Thymus	thymus
4	chr14:55754800-55778800	Weak transcription	Hela-S3	cervix
5	chr14:55755000-55774800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr14:55756400-55779000	Weak transcription	Gastric	stomach
7	chr14:55761200-55773200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr14:55761800-55772400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr14:55762000-55778200	Weak transcription	Placenta	Placenta
10	chr14:55764400-55773800	Weak transcription	Fetal Lung	lung
11	chr14:55764800-55772400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr14:55764800-55773400	Weak transcription	HUVEC	blood vessel
13	chr14:55765000-55779000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr14:55765200-55772600	Weak transcription	Primary T cells from cord blood	blood
15	chr14:55765600-55774600	Weak transcription	Lung	lung
16	chr14:55765800-55776800	Weak transcription	Dnd41	blood
17	chr14:55766000-55773800	Weak transcription	Adipose Nuclei	Adipose
18	chr14:55766000-55777200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr14:55766000-55778200	Weak transcription	Thymus	Thymus
20	chr14:55766000-55778400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr14:55766000-55779000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr14:55766200-55776600	Weak transcription	Fetal Intestine Small	intestine
23	chr14:55766200-55778800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr14:55766600-55771400	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr14:55767800-55771400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr14:55768000-55771400	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr14:55768000-55771400	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr14:55768200-55771400	Enhancers	Stomach Mucosa	stomach
29	chr14:55768200-55771600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr14:55768600-55771400	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr14:55768600-55771400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr14:55768600-55772400	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr14:55768600-55778800	Weak transcription	NHLF	lung
34	chr14:55768600-55783800	Weak transcription	Right Ventricle	heart
35	chr14:55768800-55773200	Weak transcription	Psoas Muscle	Psoas
36	chr14:55768800-55773800	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr14:55768800-55776400	Weak transcription	NHDF-Ad	bronchial
38	chr14:55768800-55779000	Weak transcription	Aorta	Aorta
39	chr14:55768800-55786400	Weak transcription	Stomach Smooth Muscle	stomach
40	chr14:55769000-55772800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr14:55769000-55772800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr14:55769000-55776600	Weak transcription	Osteobl	bone
43	chr14:55769000-55777200	Weak transcription	A549	lung
44	chr14:55769400-55772000	Enhancers	Primary neutrophils fromperipheralblood	blood
45	chr14:55769400-55773200	Weak transcription	Esophagus	oesophagus
46	chr14:55769400-55773200	Weak transcription	Left Ventricle	heart
47	chr14:55769400-55773200	Weak transcription	Pancreas	Pancrea
48	chr14:55769400-55773800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
49	chr14:55769400-55773800	Weak transcription	Right Atrium	heart
50	chr14:55769400-55773800	Weak transcription	Small Intestine	intestine

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