Variant report

Variant	rs72717777
Chromosome Location	chr14:55893104-55893105
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55877097..55882120-chr14:55890369..55898508,8	MCF-7	breast:
2	chr14:55889778..55893394-chr14:55894134..55896526,3	K562	blood:

Variant related genes	Relation type
ENSG00000126775	Chromatin interaction
ENSG00000239199	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs35342573	0.86[EUR][1000 genomes]
rs67626275	0.86[EUR][1000 genomes]
rs72715705	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs72715707	0.86[EUR][1000 genomes]
rs72715716	0.86[EUR][1000 genomes]
rs72715749	0.86[EUR][1000 genomes]
rs72715750	0.86[EUR][1000 genomes]
rs72715752	0.86[EUR][1000 genomes]
rs72715756	0.86[EUR][1000 genomes]
rs72715758	0.86[EUR][1000 genomes]
rs72715765	0.86[EUR][1000 genomes]
rs72715773	0.86[EUR][1000 genomes]
rs72715777	0.86[EUR][1000 genomes]
rs72715782	0.86[EUR][1000 genomes]
rs72715784	0.86[EUR][1000 genomes]
rs72715789	0.86[EUR][1000 genomes]
rs72715791	0.86[EUR][1000 genomes]
rs72715792	0.86[EUR][1000 genomes]
rs72715794	0.86[EUR][1000 genomes]
rs72717703	0.86[EUR][1000 genomes]
rs72717705	0.86[EUR][1000 genomes]
rs72717706	0.86[EUR][1000 genomes]
rs72717707	0.86[EUR][1000 genomes]
rs72717708	0.86[EUR][1000 genomes]
rs72717715	0.86[EUR][1000 genomes]
rs72717720	0.86[EUR][1000 genomes]
rs72717724	0.86[EUR][1000 genomes]
rs72717725	0.86[EUR][1000 genomes]
rs72717733	0.86[EUR][1000 genomes]
rs72717736	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs72717741	0.86[EUR][1000 genomes]
rs72717743	0.86[EUR][1000 genomes]
rs72717746	0.86[EUR][1000 genomes]
rs72717748	0.86[EUR][1000 genomes]
rs72717749	0.86[EUR][1000 genomes]
rs72717754	0.86[EUR][1000 genomes]
rs72717756	0.86[EUR][1000 genomes]
rs72717758	0.86[EUR][1000 genomes]
rs72718856	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901958	chr14:55822095-56045411	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv901959	chr14:55853724-55916225	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	n/a
3	nsv901960	chr14:55853724-56085130	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv901961	chr14:55853724-56101879	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv901962	chr14:55862956-56101879	Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
6	nsv901963	chr14:55871452-56085130	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
7	nsv901964	chr14:55871452-56101879	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
8	nsv564874	chr14:55879685-56027815	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55890600-55900600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr14:55890800-55893600	Weak transcription	K562	blood
3	chr14:55891800-55895600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr14:55891800-55896600	Weak transcription	Primary T cells from cord blood	blood
5	chr14:55892000-55896600	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr14:55892000-55896600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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