Variant report

Variant	rs35342573
Chromosome Location	chr14:55818275-55818276
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55812369..55814760-chr14:55818097..55821866,3	MCF-7	breast:
2	chr14:55736450..55738716-chr14:55817481..55820238,2	K562	blood:

Variant related genes	Relation type
ENSG00000178974	Chromatin interaction
ENSG00000258413	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs17742621	0.94[AFR][1000 genomes]
rs67626275	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715705	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715707	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715716	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715735	0.86[EUR][1000 genomes]
rs72715743	1.00[AMR][1000 genomes]
rs72715749	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715750	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715752	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715756	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715758	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715763	1.00[AMR][1000 genomes]
rs72715765	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715773	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715777	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715782	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715784	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715789	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715791	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715792	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715794	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717703	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717705	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717706	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717707	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717708	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717713	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72717715	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717720	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717725	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717736	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717749	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717754	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717756	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717758	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717766	0.83[AMR][1000 genomes]
rs72717777	0.86[EUR][1000 genomes]
rs72718806	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72718810	0.86[EUR][1000 genomes]
rs72718813	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72718815	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72718818	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72718819	1.00[AMR][1000 genomes]
rs72718821	1.00[AMR][1000 genomes]
rs72718822	1.00[AMR][1000 genomes]
rs72718824	1.00[AMR][1000 genomes]
rs72718831	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718835	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718837	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718840	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718843	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718844	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718845	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718846	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718847	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718850	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718856	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039438	chr14:55746585-55886099	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55800600-55823600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr14:55801200-55842800	Weak transcription	Fetal Brain Male	brain
3	chr14:55806800-55820800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr14:55808800-55865200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr14:55811200-55820600	Weak transcription	Fetal Heart	heart
6	chr14:55813600-55837200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr14:55814000-55830400	Weak transcription	Colon Smooth Muscle	Colon
8	chr14:55814400-55853200	Weak transcription	Right Atrium	heart
9	chr14:55815400-55820600	Weak transcription	Psoas Muscle	Psoas
10	chr14:55816000-55837200	Weak transcription	K562	blood
11	chr14:55816200-55820600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr14:55816400-55823600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr14:55816600-55819600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr14:55816600-55823000	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr14:55817000-55818400	Strong transcription	Muscle Satellite Cultured Cells	--
16	chr14:55817000-55819200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr14:55817000-55819400	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr14:55817000-55819400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr14:55817000-55819600	Strong transcription	Primary T cells from cord blood	blood
20	chr14:55817000-55819600	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr14:55817000-55819600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr14:55817000-55819800	Strong transcription	Cortex derived primary cultured neurospheres	brain
23	chr14:55817000-55819800	Strong transcription	Thymus	Thymus
24	chr14:55817000-55820000	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr14:55817000-55820000	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr14:55817000-55820000	Strong transcription	Osteobl	bone
27	chr14:55817000-55820200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr14:55817000-55821000	Strong transcription	Primary neutrophils fromperipheralblood	blood
29	chr14:55817000-55822800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr14:55817200-55818400	Strong transcription	Fetal Lung	lung
31	chr14:55817200-55818800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
32	chr14:55817200-55818800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr14:55817200-55818800	Strong transcription	Brain Substantia Nigra	brain
34	chr14:55817200-55818800	Strong transcription	Skeletal Muscle Female	skeletal muscle
35	chr14:55817200-55819000	Strong transcription	NH-A	brain
36	chr14:55817200-55819200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr14:55817200-55819200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr14:55817200-55819200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr14:55817200-55819200	Strong transcription	Rectal Smooth Muscle	rectum
40	chr14:55817200-55819200	Strong transcription	Skeletal Muscle Male	skeletal muscle
41	chr14:55817200-55819200	Strong transcription	HUVEC	blood vessel
42	chr14:55817200-55819200	Strong transcription	NHEK	skin
43	chr14:55817200-55819200	Strong transcription	NHLF	lung
44	chr14:55817200-55819400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr14:55817200-55819400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr14:55817200-55819400	Strong transcription	Adipose Nuclei	Adipose
47	chr14:55817200-55819400	Strong transcription	Brain Anterior Caudate	brain
48	chr14:55817200-55819400	Strong transcription	Brain Cingulate Gyrus	brain
49	chr14:55817200-55819400	Strong transcription	HepG2	liver
50	chr14:55817200-55819600	Strong transcription	H1 Cell Line	embryonic stem cell

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