Variant report

Variant	rs72715749
Chromosome Location	chr14:55744642-55744643
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55736955..55739749-chr14:55742518..55745062,4	MCF-7	breast:
2	chr14:55744215..55745744-chr14:55768392..55770363,2	K562	blood:
3	chr14:55737408..55740170-chr14:55742761..55744765,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178974	Chromatin interaction
ENSG00000258413	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs35342573	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35954941	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67626275	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715705	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715707	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715716	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715735	0.86[EUR][1000 genomes]
rs72715743	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72715750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715752	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715756	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715758	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715763	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72715765	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715773	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715777	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715782	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715784	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715789	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715791	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715792	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715794	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72716648	1.00[AMR][1000 genomes]
rs72716652	0.83[AMR][1000 genomes]
rs72716654	0.83[AMR][1000 genomes]
rs72716661	0.83[AMR][1000 genomes]
rs72716663	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716665	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716666	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716668	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716676	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716677	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716678	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716681	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716688	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716690	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716692	0.86[EUR][1000 genomes]
rs72716698	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72717703	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717705	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717706	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717707	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717708	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717713	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72717715	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717720	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717725	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717733	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717736	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717743	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717746	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717748	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717749	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717754	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717756	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717758	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717766	0.83[AMR][1000 genomes]
rs72717777	0.86[EUR][1000 genomes]
rs72718806	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72718810	0.86[EUR][1000 genomes]
rs72718813	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72718815	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72718818	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72718819	1.00[AMR][1000 genomes]
rs72718821	1.00[AMR][1000 genomes]
rs72718822	1.00[AMR][1000 genomes]
rs72718824	1.00[AMR][1000 genomes]
rs72718831	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718835	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718837	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718840	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718843	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718844	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718845	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718846	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718847	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718850	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718856	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55739000-55751400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:55739000-55755600	Weak transcription	Gastric	stomach
3	chr14:55739200-55745600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr14:55739200-55768400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr14:55739600-55744800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr14:55739600-55744800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr14:55739600-55745400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr14:55739600-55745400	Weak transcription	Fetal Stomach	stomach
9	chr14:55740000-55745600	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr14:55740000-55746400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr14:55740000-55751400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr14:55740000-55751400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr14:55740000-55770600	Weak transcription	Colonic Mucosa	Colon
14	chr14:55740200-55744800	Enhancers	HepG2	liver
15	chr14:55740200-55746400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr14:55740200-55754200	Weak transcription	Hela-S3	cervix
17	chr14:55740600-55751400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr14:55740800-55750800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr14:55740800-55751400	Weak transcription	Placenta	Placenta
20	chr14:55740800-55752000	Weak transcription	Esophagus	oesophagus
21	chr14:55741000-55744800	Enhancers	Dnd41	blood
22	chr14:55741000-55746600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr14:55741000-55764600	Weak transcription	Fetal Muscle Leg	muscle
24	chr14:55741000-55773200	Weak transcription	Fetal Muscle Trunk	muscle
25	chr14:55741200-55749000	Weak transcription	Right Atrium	heart
26	chr14:55741200-55754000	Weak transcription	Fetal Brain Male	brain
27	chr14:55741800-55744800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr14:55741800-55745000	Enhancers	Fetal Heart	heart
29	chr14:55741800-55750800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr14:55741800-55752400	Weak transcription	A549	lung
31	chr14:55741800-55763800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr14:55741800-55763800	Weak transcription	NHEK	skin
33	chr14:55741800-55764600	Weak transcription	HMEC	breast
34	chr14:55742000-55752200	Weak transcription	Fetal Lung	lung
35	chr14:55742000-55765400	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr14:55742200-55744800	Weak transcription	Brain Substantia Nigra	brain
37	chr14:55742200-55749800	Weak transcription	Fetal Kidney	kidney
38	chr14:55742200-55751600	Weak transcription	Osteobl	bone
39	chr14:55742200-55754000	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr14:55742200-55754200	Weak transcription	Brain Hippocampus Middle	brain
41	chr14:55742200-55754600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr14:55742400-55747800	Weak transcription	Right Ventricle	heart
43	chr14:55742600-55754400	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr14:55742800-55746800	Enhancers	Primary T helper cells fromperipheralblood	blood
45	chr14:55742800-55752000	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr14:55742800-55754200	Weak transcription	Brain Cingulate Gyrus	brain
47	chr14:55743000-55744800	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr14:55743000-55745600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr14:55743000-55747200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
50	chr14:55743400-55745200	Enhancers	Colon Smooth Muscle	Colon

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