Variant report

Variant	rs72716654
Chromosome Location	chr14:55559740-55559741
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55559019..55561497-chr14:55562347..55564712,2	K562	blood:
2	chr14:55550357..55576811-chr14:55577745..55605179,160	MCF-7	breast:
3	chr14:55525084..55526733-chr14:55558948..55561565,2	K562	blood:
4	chr14:55558620..55560382-chr14:55567548..55569808,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131981	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs17128147	1.00[EUR][1000 genomes]
rs35954941	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58481989	1.00[EUR][1000 genomes]
rs72715588	1.00[EUR][1000 genomes]
rs72715590	1.00[EUR][1000 genomes]
rs72715591	1.00[EUR][1000 genomes]
rs72715592	1.00[EUR][1000 genomes]
rs72715705	0.83[AMR][1000 genomes]
rs72715707	0.83[AMR][1000 genomes]
rs72715716	0.83[AMR][1000 genomes]
rs72715743	0.83[AMR][1000 genomes]
rs72715749	0.83[AMR][1000 genomes]
rs72715750	0.83[AMR][1000 genomes]
rs72715752	0.83[AMR][1000 genomes]
rs72715756	0.83[AMR][1000 genomes]
rs72715758	0.83[AMR][1000 genomes]
rs72715763	0.83[AMR][1000 genomes]
rs72715765	0.83[AMR][1000 genomes]
rs72716642	1.00[EUR][1000 genomes]
rs72716643	1.00[EUR][1000 genomes]
rs72716648	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72716652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72716661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72716663	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716665	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716666	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716668	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716676	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716677	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716678	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716681	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716688	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716690	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716692	0.86[EUR][1000 genomes]
rs72716698	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72718806	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72718810	0.86[EUR][1000 genomes]
rs72718813	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72718815	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72718818	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72718819	0.83[AMR][1000 genomes]
rs72718821	0.83[AMR][1000 genomes]
rs72718822	0.83[AMR][1000 genomes]
rs72718824	0.83[AMR][1000 genomes]
rs72718831	0.83[AMR][1000 genomes]
rs72718835	0.83[AMR][1000 genomes]
rs72718837	0.83[AMR][1000 genomes]
rs72718840	0.83[AMR][1000 genomes]
rs72718843	0.83[AMR][1000 genomes]
rs72718844	0.83[AMR][1000 genomes]
rs72718845	0.83[AMR][1000 genomes]
rs72718846	0.83[AMR][1000 genomes]
rs72718847	0.83[AMR][1000 genomes]
rs72718850	0.83[AMR][1000 genomes]
rs72718856	0.83[AMR][1000 genomes]

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55545000-55561400	Weak transcription	HMEC	breast
2	chr14:55549200-55559800	Weak transcription	Ovary	ovary
3	chr14:55551400-55560800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:55551400-55564800	Weak transcription	Right Atrium	heart
5	chr14:55552400-55559800	Weak transcription	Stomach Mucosa	stomach
6	chr14:55556200-55560000	Enhancers	Fetal Intestine Small	intestine
7	chr14:55556200-55560200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr14:55556400-55561000	Weak transcription	A549	lung
9	chr14:55556400-55561400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr14:55556400-55561600	Weak transcription	NH-A	brain
11	chr14:55556400-55561800	Weak transcription	NHLF	lung
12	chr14:55556400-55564000	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr14:55556600-55559800	Enhancers	Fetal Intestine Large	intestine
14	chr14:55557000-55561400	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr14:55557000-55561400	Weak transcription	Osteobl	bone
16	chr14:55557600-55560800	Weak transcription	Hela-S3	cervix
17	chr14:55557600-55561000	Weak transcription	Placenta	Placenta
18	chr14:55557600-55561400	Weak transcription	NHEK	skin
19	chr14:55557800-55561000	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr14:55557800-55568600	Weak transcription	Fetal Heart	heart
21	chr14:55558400-55559800	Enhancers	Adipose Nuclei	Adipose
22	chr14:55558400-55560000	Enhancers	Fetal Muscle Leg	muscle
23	chr14:55558400-55560200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr14:55558600-55560000	Enhancers	Colonic Mucosa	Colon
25	chr14:55558600-55560000	Enhancers	Rectal Mucosa Donor 29	rectum
26	chr14:55558600-55560000	Enhancers	Sigmoid Colon	Sigmoid Colon
27	chr14:55558800-55560200	Enhancers	Fetal Muscle Trunk	muscle
28	chr14:55559000-55560800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr14:55559000-55561000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr14:55559000-55563800	Weak transcription	GM12878-XiMat	blood
31	chr14:55559200-55560000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr14:55559200-55560400	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr14:55559200-55561600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr14:55559200-55569000	Weak transcription	Esophagus	oesophagus
35	chr14:55559400-55560800	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr14:55559600-55560000	Enhancers	NHDF-Ad	bronchial
37	chr14:55559600-55560200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr14:55559600-55561400	Weak transcription	Fetal Kidney	kidney
39	chr14:55559600-55564000	Weak transcription	Duodenum Mucosa	Duodenum
40	chr14:55559600-55564200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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