Variant report

Variant	rs72716661
Chromosome Location	chr14:55567638-55567639
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55564337..55568132-chr14:55580287..55582932,3	MCF-7	breast:
2	chr14:55558620..55560382-chr14:55567548..55569808,2	MCF-7	breast:
3	chr14:55550357..55576811-chr14:55577745..55605179,160	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131981	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs17128147	1.00[EUR][1000 genomes]
rs35954941	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58481989	1.00[EUR][1000 genomes]
rs72715588	1.00[EUR][1000 genomes]
rs72715590	1.00[EUR][1000 genomes]
rs72715591	1.00[EUR][1000 genomes]
rs72715592	1.00[EUR][1000 genomes]
rs72715705	0.83[AMR][1000 genomes]
rs72715707	0.83[AMR][1000 genomes]
rs72715716	0.83[AMR][1000 genomes]
rs72715743	0.83[AMR][1000 genomes]
rs72715749	0.83[AMR][1000 genomes]
rs72715750	0.83[AMR][1000 genomes]
rs72715752	0.83[AMR][1000 genomes]
rs72715756	0.83[AMR][1000 genomes]
rs72715758	0.83[AMR][1000 genomes]
rs72715763	0.83[AMR][1000 genomes]
rs72715765	0.83[AMR][1000 genomes]
rs72715773	0.83[AMR][1000 genomes]
rs72715777	0.83[AMR][1000 genomes]
rs72716642	1.00[EUR][1000 genomes]
rs72716643	1.00[EUR][1000 genomes]
rs72716648	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72716652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72716654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72716663	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716665	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716666	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716668	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716676	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716677	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716678	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716681	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716688	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716690	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716692	0.86[EUR][1000 genomes]
rs72716698	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72718806	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72718810	0.86[EUR][1000 genomes]
rs72718813	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72718815	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72718818	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72718819	0.83[AMR][1000 genomes]
rs72718821	0.83[AMR][1000 genomes]
rs72718822	0.83[AMR][1000 genomes]
rs72718824	0.83[AMR][1000 genomes]
rs72718831	0.83[AMR][1000 genomes]
rs72718835	0.83[AMR][1000 genomes]
rs72718837	0.83[AMR][1000 genomes]
rs72718840	0.83[AMR][1000 genomes]
rs72718843	0.83[AMR][1000 genomes]
rs72718844	0.83[AMR][1000 genomes]
rs72718845	0.83[AMR][1000 genomes]
rs72718846	0.83[AMR][1000 genomes]
rs72718847	0.83[AMR][1000 genomes]
rs72718850	0.83[AMR][1000 genomes]
rs72718856	0.83[AMR][1000 genomes]

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55557800-55568600	Weak transcription	Fetal Heart	heart
2	chr14:55559200-55569000	Weak transcription	Esophagus	oesophagus
3	chr14:55560600-55569200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr14:55561200-55568000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr14:55561800-55568400	Weak transcription	HMEC	breast
6	chr14:55561800-55568800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr14:55562000-55568800	Weak transcription	HSMM	muscle
8	chr14:55564000-55569000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr14:55564000-55569200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr14:55564000-55570200	Enhancers	Stomach Mucosa	stomach
11	chr14:55564200-55568400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr14:55564200-55568400	Weak transcription	Gastric	stomach
13	chr14:55564200-55568800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr14:55564200-55569000	Enhancers	Fetal Intestine Small	intestine
15	chr14:55564400-55569800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr14:55564800-55568600	Weak transcription	Brain Angular Gyrus	brain
17	chr14:55565000-55568600	Weak transcription	Colon Smooth Muscle	Colon
18	chr14:55565000-55568600	Weak transcription	A549	lung
19	chr14:55565000-55568800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr14:55565200-55567800	Weak transcription	Colonic Mucosa	Colon
21	chr14:55565200-55568600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr14:55565200-55568600	Weak transcription	Brain Substantia Nigra	brain
23	chr14:55565200-55569000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr14:55565200-55569000	Weak transcription	Brain Anterior Caudate	brain
25	chr14:55565200-55570600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr14:55565400-55567800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr14:55565400-55568200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr14:55565400-55568400	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr14:55565400-55568600	Weak transcription	Brain Hippocampus Middle	brain
30	chr14:55565400-55568600	Weak transcription	NH-A	brain
31	chr14:55565400-55568800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr14:55565400-55568800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr14:55565400-55568800	Weak transcription	K562	blood
34	chr14:55565400-55569000	Weak transcription	Brain Cingulate Gyrus	brain
35	chr14:55565600-55567800	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr14:55565600-55567800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr14:55565600-55568600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr14:55565600-55568600	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr14:55565600-55568600	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr14:55565600-55568600	Weak transcription	Spleen	Spleen
41	chr14:55565800-55568400	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr14:55565800-55568600	Weak transcription	Primary B cells from peripheral blood	blood
43	chr14:55565800-55568600	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr14:55565800-55568600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr14:55565800-55568600	Weak transcription	Psoas Muscle	Psoas
46	chr14:55565800-55568800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr14:55566000-55567800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr14:55566000-55568800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr14:55566200-55569200	Enhancers	NHDF-Ad	bronchial
50	chr14:55566400-55568800	Enhancers	Hela-S3	cervix

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