Variant report

Variant	rs72718847
Chromosome Location	chr14:55683602-55683603
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs35342573	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35954941	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67626275	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715705	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715707	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715735	0.86[EUR][1000 genomes]
rs72715743	1.00[AMR][1000 genomes]
rs72715749	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715750	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715752	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715756	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715758	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715763	1.00[AMR][1000 genomes]
rs72715765	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715773	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715777	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715782	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715784	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715789	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715791	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715792	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715794	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72716648	1.00[AMR][1000 genomes]
rs72716652	0.83[AMR][1000 genomes]
rs72716654	0.83[AMR][1000 genomes]
rs72716661	0.83[AMR][1000 genomes]
rs72716663	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716665	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716666	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716668	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716676	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716677	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716678	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716681	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716688	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716690	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716692	0.86[EUR][1000 genomes]
rs72716698	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72717703	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717705	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717706	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717707	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717708	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717713	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72717715	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717720	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717725	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717733	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717736	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717743	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717746	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717748	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717749	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717754	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717756	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717758	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718806	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72718810	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs72718813	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72718815	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72718818	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72718819	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72718821	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72718822	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72718824	1.00[AMR][1000 genomes]
rs72718831	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718835	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718837	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718840	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718843	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718846	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035158	chr14:55638386-55684228	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55679800-55684800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr14:55679800-55685200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:55679800-55685200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr14:55680200-55685600	Weak transcription	NHEK	skin
5	chr14:55680400-55685000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr14:55680400-55685000	Weak transcription	HMEC	breast

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