Variant report

Variant	rs72716692
Chromosome Location	chr14:55607781-55607782
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55573704..55575729-chr14:55607371..55609578,2	MCF-7	breast:
2	chr14:55607540..55609514-chr14:55612298..55615011,2	MCF-7	breast:
3	chr14:55526794..55528357-chr14:55606390..55608686,2	MCF-7	breast:
4	chr14:55606982..55609476-chr9:111146186..111147743,2	MCF-7	breast:
5	chr14:55597715..55602179-chr14:55607312..55610754,5	MCF-7	breast:

rs_ID	r²[population]
rs17128147	0.86[EUR][1000 genomes]
rs35954941	1.00[EUR][1000 genomes]
rs58481989	0.86[EUR][1000 genomes]
rs72715588	0.86[EUR][1000 genomes]
rs72715590	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs72715591	0.86[EUR][1000 genomes]
rs72715592	0.86[EUR][1000 genomes]
rs72715705	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs72715707	0.86[EUR][1000 genomes]
rs72715716	0.86[EUR][1000 genomes]
rs72715749	0.86[EUR][1000 genomes]
rs72715750	0.86[EUR][1000 genomes]
rs72715752	0.86[EUR][1000 genomes]
rs72715756	0.86[EUR][1000 genomes]
rs72715758	0.86[EUR][1000 genomes]
rs72715765	0.86[EUR][1000 genomes]
rs72715773	0.86[EUR][1000 genomes]
rs72715777	0.86[EUR][1000 genomes]
rs72715782	0.86[EUR][1000 genomes]
rs72715784	0.86[EUR][1000 genomes]
rs72715789	0.86[EUR][1000 genomes]
rs72715791	0.86[EUR][1000 genomes]
rs72715792	0.86[EUR][1000 genomes]
rs72715794	0.86[EUR][1000 genomes]
rs72716642	0.86[EUR][1000 genomes]
rs72716643	0.86[EUR][1000 genomes]
rs72716648	0.86[EUR][1000 genomes]
rs72716652	0.86[EUR][1000 genomes]
rs72716654	0.86[EUR][1000 genomes]
rs72716661	0.86[EUR][1000 genomes]
rs72716663	1.00[EUR][1000 genomes]
rs72716665	1.00[EUR][1000 genomes]
rs72716666	1.00[EUR][1000 genomes]
rs72716668	1.00[EUR][1000 genomes]
rs72716676	1.00[EUR][1000 genomes]
rs72716677	1.00[EUR][1000 genomes]
rs72716678	1.00[EUR][1000 genomes]
rs72716681	1.00[EUR][1000 genomes]
rs72716688	1.00[EUR][1000 genomes]
rs72716690	1.00[EUR][1000 genomes]
rs72716698	1.00[EUR][1000 genomes]
rs72717703	0.86[EUR][1000 genomes]
rs72717705	0.86[EUR][1000 genomes]
rs72717706	0.86[EUR][1000 genomes]
rs72717707	0.86[EUR][1000 genomes]
rs72717708	0.86[EUR][1000 genomes]
rs72718806	1.00[EUR][1000 genomes]
rs72718810	1.00[EUR][1000 genomes]
rs72718813	1.00[EUR][1000 genomes]
rs72718815	1.00[EUR][1000 genomes]
rs72718818	1.00[EUR][1000 genomes]
rs72718831	0.86[EUR][1000 genomes]
rs72718835	0.86[EUR][1000 genomes]
rs72718837	0.86[EUR][1000 genomes]
rs72718840	0.86[EUR][1000 genomes]
rs72718843	0.86[EUR][1000 genomes]
rs72718844	0.86[EUR][1000 genomes]
rs72718845	0.86[EUR][1000 genomes]
rs72718846	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs72718847	0.86[EUR][1000 genomes]
rs72718850	0.86[EUR][1000 genomes]
rs72718856	0.86[EUR][1000 genomes]

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55597000-55613000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:55598400-55613000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr14:55598600-55607800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr14:55598600-55656600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr14:55598800-55610800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr14:55598800-55611800	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr14:55598800-55613000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr14:55600200-55613200	Weak transcription	Psoas Muscle	Psoas
9	chr14:55600600-55611600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr14:55600800-55609400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr14:55601600-55610800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr14:55602600-55613800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr14:55603200-55615400	Strong transcription	Hela-S3	cervix
14	chr14:55604000-55636400	Strong transcription	Fetal Thymus	thymus
15	chr14:55604200-55613000	Weak transcription	Liver	Liver
16	chr14:55604400-55608200	Genic enhancers	Fetal Intestine Small	intestine
17	chr14:55604400-55608400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr14:55604400-55610400	Genic enhancers	Fetal Intestine Large	intestine
19	chr14:55604400-55611800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr14:55604400-55615600	Strong transcription	HSMM	muscle
21	chr14:55604400-55615800	Strong transcription	Muscle Satellite Cultured Cells	--
22	chr14:55604400-55620800	Weak transcription	K562	blood
23	chr14:55604600-55609600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr14:55604600-55611000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr14:55604600-55613400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr14:55604600-55613400	Weak transcription	Brain Cingulate Gyrus	brain
27	chr14:55604600-55615200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr14:55604600-55615400	Strong transcription	NHEK	skin
29	chr14:55604600-55627800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr14:55604800-55608800	Strong transcription	Placenta Amnion	Placenta Amnion
31	chr14:55604800-55610200	Strong transcription	GM12878-XiMat	blood
32	chr14:55604800-55614800	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr14:55604800-55616200	Strong transcription	HMEC	breast
34	chr14:55604800-55623200	Weak transcription	Brain Germinal Matrix	brain
35	chr14:55605000-55608000	Strong transcription	Fetal Stomach	stomach
36	chr14:55605000-55609800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr14:55605000-55611800	Strong transcription	Colonic Mucosa	Colon
38	chr14:55605000-55612000	Strong transcription	HSMMtube	muscle
39	chr14:55605000-55613400	Strong transcription	Placenta	Placenta
40	chr14:55605000-55614200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr14:55605000-55614200	Strong transcription	Thymus	Thymus
42	chr14:55605000-55614600	Strong transcription	NHDF-Ad	bronchial
43	chr14:55605000-55614800	Strong transcription	NH-A	brain
44	chr14:55605000-55616600	Strong transcription	Osteobl	bone
45	chr14:55605000-55627600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr14:55605200-55608200	Strong transcription	Esophagus	oesophagus
47	chr14:55605200-55608400	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr14:55605200-55608800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr14:55605200-55608800	Strong transcription	Colon Smooth Muscle	Colon
50	chr14:55605200-55608800	Strong transcription	Fetal Muscle Leg	muscle

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