Variant report

Variant	rs11845908
Chromosome Location	chr14:55398989-55398990
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55398005..55400278-chr14:55404277..55406642,2	K562	blood:
2	chr14:55368213..55370386-chr14:55398172..55400345,2	MCF-7	breast:
3	chr14:55368563..55370483-chr14:55397139..55400016,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131979	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10151058	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11844654	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11845954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11847254	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1354	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17128143	1.00[CHD][hapmap]
rs17671485	1.00[ASN][1000 genomes]
rs17738966	1.00[ASN][1000 genomes]
rs17739146	1.00[ASN][1000 genomes]
rs17851309	1.00[CHD][hapmap]
rs1951437	1.00[ASN][1000 genomes]
rs1951438	1.00[ASN][1000 genomes]
rs28678578	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4340245	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55934565	1.00[ASN][1000 genomes]
rs61744409	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7146775	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7147147	1.00[CEU][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7148831	1.00[ASN][1000 genomes]
rs73278735	1.00[ASN][1000 genomes]
rs8016944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932970	chr14:55326559-55532749	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1038242	chr14:55398559-55444839	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55389600-55406600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr14:55392800-55402400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:55394200-55443000	Weak transcription	HSMMtube	muscle
4	chr14:55394400-55409600	Weak transcription	A549	lung
5	chr14:55394400-55428800	Weak transcription	HSMM	muscle
6	chr14:55395200-55414800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr14:55395200-55422800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr14:55395400-55415000	Weak transcription	Fetal Muscle Leg	muscle

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