The 2.0 version of rSNPBase

Variant report

Variant rs55934565
Chromosome Location chr14:55326331-55326332
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:59 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr14:55303400-55337000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
2 chr14:55305200-55337200 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr14:55305800-55326400 Weak transcription Fetal Thymus thymus
4 chr14:55306200-55337000 Weak transcription Rectal Mucosa Donor 31 rectum
5 chr14:55306400-55336800 Weak transcription Dnd41 blood
6 chr14:55306600-55336600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
7 chr14:55306800-55327400 Weak transcription Pancreas Pancrea
8 chr14:55306800-55337000 Weak transcription Brain Anterior Caudate brain
9 chr14:55308000-55336600 Weak transcription Primary T killer memory cells from peripheral blood blood
10 chr14:55308200-55332400 Weak transcription Fetal Adrenal Gland Adrenal Gland
11 chr14:55308400-55330600 Weak transcription Rectal Mucosa Donor 29 rectum
12 chr14:55311800-55331200 Weak transcription Hela-S3 cervix
13 chr14:55311800-55337000 Weak transcription Fetal Intestine Large intestine
14 chr14:55321000-55329400 Weak transcription Stomach Mucosa stomach
15 chr14:55321000-55337000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
16 chr14:55321200-55337000 Weak transcription H1 Cell Line embryonic stem cell
17 chr14:55321400-55326800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
18 chr14:55321400-55329400 Weak transcription HUES48 Cell Line embryonic stem cell
19 chr14:55322800-55331600 Strong transcription Primary T helper cells fromperipheralblood blood
20 chr14:55323000-55327200 Strong transcription Liver Liver
21 chr14:55324200-55327200 Strong transcription Primary T cells from cord blood blood
22 chr14:55324200-55331400 Strong transcription Primary T cells fromperipheralblood blood
23 chr14:55324400-55327800 Weak transcription Fetal Muscle Leg muscle
24 chr14:55324400-55334000 Weak transcription Fetal Muscle Trunk muscle
25 chr14:55324800-55326400 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
26 chr14:55324800-55327200 Strong transcription HepG2 liver
27 chr14:55324800-55331200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
28 chr14:55324800-55332400 Weak transcription Fetal Lung lung
29 chr14:55324800-55337000 Weak transcription Duodenum Smooth Muscle Duodenum
30 chr14:55325000-55331200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
31 chr14:55325000-55331200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
32 chr14:55325000-55332600 Weak transcription Small Intestine intestine
33 chr14:55325000-55337200 Weak transcription Adipose Nuclei Adipose
34 chr14:55325200-55333200 Weak transcription Fetal Stomach stomach
35 chr14:55325400-55326600 Strong transcription Breast Myoepithelial Primary Cells Breast
36 chr14:55325400-55332200 Strong transcription Primary T regulatory cells fromperipheralblood blood
37 chr14:55325600-55326400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
38 chr14:55325600-55326400 Genic enhancers Primary mononuclear cells fromperipheralblood Blood
39 chr14:55325600-55326400 Strong transcription Lung lung
40 chr14:55325600-55327000 Strong transcription Primary T helper naive cells fromperipheralblood blood
41 chr14:55325600-55327200 Strong transcription Primary neutrophils fromperipheralblood blood
42 chr14:55325600-55327200 Strong transcription Primary T helper memory cells from peripheral blood 1 blood
43 chr14:55325600-55327200 Strong transcription Primary T helper cells PMA-I stimulated --
44 chr14:55325600-55327200 Strong transcription Duodenum Mucosa Duodenum
45 chr14:55325600-55327400 Strong transcription Primary T helper 17 cells PMA-I stimulated --
46 chr14:55325600-55327600 Genic enhancers Primary monocytes fromperipheralblood blood
47 chr14:55325800-55326400 Strong transcription Fetal Intestine Small intestine
48 chr14:55325800-55326400 Strong transcription Pancreatic Islets Pancreatic Islet
49 chr14:55325800-55326600 Strong transcription Primary T helper naive cells from peripheral blood blood
50 chr14:55325800-55327000 Strong transcription Primary T helper memory cells from peripheral blood 2 blood

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Last update: Aug 31, 2015