Variant report

Variant	rs11847254
Chromosome Location	chr14:55393144-55393145
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10151058	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11844654	0.97[EUR][1000 genomes]
rs11845908	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11845954	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1354	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17671485	1.00[ASN][1000 genomes]
rs17738966	1.00[ASN][1000 genomes]
rs17739146	1.00[ASN][1000 genomes]
rs1951437	1.00[ASN][1000 genomes]
rs1951438	1.00[ASN][1000 genomes]
rs28678578	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4340245	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55934565	1.00[ASN][1000 genomes]
rs61744409	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7146775	1.00[EUR][1000 genomes]
rs7147147	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7148831	1.00[ASN][1000 genomes]
rs73278735	1.00[ASN][1000 genomes]
rs8016944	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932970	chr14:55326559-55532749	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55389600-55406600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr14:55392800-55402400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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