Variant report

Variant	rs17131392
Chromosome Location	chr1:71135524-71135525
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11209669	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11209673	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12119117	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12122295	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12128996	0.82[EUR][1000 genomes]
rs12140313	0.82[EUR][1000 genomes]
rs12144016	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1999676	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61778688	0.96[EUR][1000 genomes]
rs6683555	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871024	chr1:71088106-71169865	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71132400-71137600	Weak transcription	Fetal Lung	lung
2	chr1:71132800-71136800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:71132800-71141000	Weak transcription	Gastric	stomach
4	chr1:71133400-71136400	Weak transcription	K562	blood
5	chr1:71133800-71137600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:71133800-71138600	Weak transcription	Aorta	Aorta
7	chr1:71134000-71140600	Weak transcription	Pancreas	Pancrea
8	chr1:71134400-71136400	Weak transcription	Fetal Stomach	stomach
9	chr1:71134600-71135800	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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