Variant report

Variant	rs6683555
Chromosome Location	chr1:71132536-71132537
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11209669	0.86[ASN][1000 genomes]
rs11209673	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12119117	0.94[ASN][1000 genomes]
rs12122295	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12128996	0.83[EUR][1000 genomes]
rs12140313	0.83[EUR][1000 genomes]
rs12144016	0.94[ASN][1000 genomes]
rs17131392	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1999676	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61778688	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871024	chr1:71088106-71169865	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3420862	chr1:71132408-71133777	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6683555	MIER1	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71132000-71134600	Enhancers	Fetal Heart	heart
2	chr1:71132200-71132600	Enhancers	Esophagus	oesophagus
3	chr1:71132200-71132800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:71132200-71132800	Enhancers	Gastric	stomach
5	chr1:71132200-71132800	Enhancers	Left Ventricle	heart
6	chr1:71132200-71132800	Enhancers	Lung	lung
7	chr1:71132200-71132800	Enhancers	Right Atrium	heart
8	chr1:71132200-71133000	Enhancers	Aorta	Aorta
9	chr1:71132200-71133000	Enhancers	Pancreas	Pancrea
10	chr1:71132200-71133800	Enhancers	Rectal Smooth Muscle	rectum
11	chr1:71132400-71132600	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr1:71132400-71133200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr1:71132400-71137600	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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