Variant report
| Variant | rs1999676 |
|---|---|
| Chromosome Location | chr1:71129155-71129156 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000197568 | Chromatin interaction |
| ENSG00000118454 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs11209669 | 0.80[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11209673 | 0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12119117 | 0.94[ASN][1000 genomes] |
| rs12122295 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12128996 | 0.81[EUR][1000 genomes] |
| rs12140313 | 0.82[EUR][1000 genomes] |
| rs12144016 | 0.94[ASN][1000 genomes] |
| rs17131392 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61778688 | 0.82[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs6683555 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv871024 | chr1:71088106-71169865 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
