Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10228341	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs10247184	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs10441039	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs11975390	1.00[CEU][hapmap]
rs12056184	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12056282	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12113191	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs13230142	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs13234562	0.91[ASN][1000 genomes]
rs17140133	0.81[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17140138	0.81[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17140237	1.00[CEU][hapmap]
rs2389995	1.00[CEU][hapmap]
rs35936891	0.88[ASN][1000 genomes]
rs3852253	0.91[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs3852254	0.92[ASN][1000 genomes]
rs3852255	1.00[CHB][hapmap];0.80[CHD][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs55885016	0.86[ASN][1000 genomes]
rs55930836	0.88[ASN][1000 genomes]
rs73312680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv887813	chr7:18720135-18995552	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv887814	chr7:18751998-18886177	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18854000-18874400	Weak transcription	Aorta	Aorta
2	chr7:18866200-18869000	Weak transcription	Osteobl	bone
3	chr7:18866800-18885200	Weak transcription	Primary B cells from cord blood	blood
4	chr7:18867200-18882400	Weak transcription	Left Ventricle	heart
5	chr7:18867800-18870000	Enhancers	HSMM	muscle
6	chr7:18868000-18868200	Enhancers	HSMMtube	muscle
7	chr7:18868000-18868400	Enhancers	NHDF-Ad	bronchial
8	chr7:18868000-18868600	Enhancers	Adipose Nuclei	Adipose
9	chr7:18868000-18869000	Enhancers	Fetal Muscle Leg	muscle
10	chr7:18868000-18869400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:18868000-18869600	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr7:18868000-18870000	Enhancers	Fetal Stomach	stomach

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