Variant report

Variant	rs55885016
Chromosome Location	chr7:18885645-18885646
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10228341	0.83[ASN][1000 genomes]
rs10247184	0.92[ASN][1000 genomes]
rs10441039	0.83[ASN][1000 genomes]
rs12056184	0.85[ASN][1000 genomes]
rs12056282	0.89[ASN][1000 genomes]
rs12113191	0.83[ASN][1000 genomes]
rs13230142	0.98[ASN][1000 genomes]
rs13234562	0.92[ASN][1000 genomes]
rs17140086	0.86[ASN][1000 genomes]
rs17140133	0.95[ASN][1000 genomes]
rs17140138	0.95[ASN][1000 genomes]
rs34707237	0.83[ASN][1000 genomes]
rs35936891	0.98[ASN][1000 genomes]
rs55930836	0.98[ASN][1000 genomes]
rs73312680	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv887813	chr7:18720135-18995552	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv887814	chr7:18751998-18886177	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18868800-18887400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:18875600-18888000	Weak transcription	Aorta	Aorta
3	chr7:18884000-18888800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr7:18884800-18887400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr7:18885400-18885800	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:18885400-18887600	Enhancers	NHDF-Ad	bronchial
7	chr7:18885600-18888400	Weak transcription	HUVEC	blood vessel

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links