Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:121779239..121781681-chr7:121799360..121802322,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PTPRZ1-7	chr7:121801388-121802297	NONHSAT123021

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11761142	0.96[ASN][1000 genomes]
rs11762921	0.82[ASN][1000 genomes]
rs11763733	0.82[ASN][1000 genomes]
rs11766185	0.96[ASN][1000 genomes]
rs1206207	0.96[ASN][1000 genomes]
rs1206353	0.81[JPT][hapmap]
rs12374930	0.82[ASN][1000 genomes]
rs1604332	0.96[ASN][1000 genomes]
rs2019876	0.82[ASN][1000 genomes]
rs2083860	0.96[ASN][1000 genomes]
rs2120365	0.96[ASN][1000 genomes]
rs279662	0.98[ASN][1000 genomes]
rs279681	0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs279687	0.93[ASN][1000 genomes]
rs279693	0.93[ASN][1000 genomes]
rs279698	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs56177919	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56331846	0.96[ASN][1000 genomes]
rs57562127	0.82[ASN][1000 genomes]
rs58850466	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60116323	0.82[ASN][1000 genomes]
rs62474297	0.96[ASN][1000 genomes]
rs62474298	0.96[ASN][1000 genomes]
rs62474305	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62474306	0.82[ASN][1000 genomes]
rs62474307	0.82[ASN][1000 genomes]
rs73226275	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427803	chr7:121701581-121876302	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv523632	chr7:121754695-121802068	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1016617	chr7:121770441-121820730	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121785800-121806400	Weak transcription	Pancreas	Pancrea
2	chr7:121797800-121811800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:121800600-121802200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr7:121800600-121802200	Enhancers	Hela-S3	cervix
5	chr7:121801400-121802200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr7:121801400-121802200	Enhancers	Osteobl	bone
7	chr7:121801800-121806200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr7:121802000-121803000	Weak transcription	Aorta	Aorta
9	chr7:121802000-121806400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:121802000-121806400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr7:121802000-121806400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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