Variant report
| Variant | rs62474305 |
|---|---|
| Chromosome Location | chr7:121835610-121835611 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs11761142 | 0.98[ASN][1000 genomes] |
| rs11762921 | 0.88[ASN][1000 genomes] |
| rs11763733 | 0.88[ASN][1000 genomes] |
| rs11766185 | 0.98[ASN][1000 genomes] |
| rs1206207 | 0.93[ASN][1000 genomes] |
| rs12374930 | 0.88[ASN][1000 genomes] |
| rs1604332 | 0.98[ASN][1000 genomes] |
| rs17144133 | 0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2019876 | 0.88[ASN][1000 genomes] |
| rs2083860 | 0.98[ASN][1000 genomes] |
| rs2120365 | 0.98[ASN][1000 genomes] |
| rs279662 | 0.96[ASN][1000 genomes] |
| rs279681 | 0.89[ASN][1000 genomes] |
| rs279687 | 0.93[ASN][1000 genomes] |
| rs279693 | 0.93[ASN][1000 genomes] |
| rs279698 | 0.93[ASN][1000 genomes] |
| rs56177919 | 0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs56331846 | 0.98[ASN][1000 genomes] |
| rs57562127 | 0.88[ASN][1000 genomes] |
| rs58850466 | 0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs60116323 | 0.88[ASN][1000 genomes] |
| rs62474297 | 0.98[ASN][1000 genomes] |
| rs62474298 | 0.98[ASN][1000 genomes] |
| rs62474306 | 0.88[ASN][1000 genomes] |
| rs62474307 | 0.88[ASN][1000 genomes] |
| rs73226275 | 0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv427803 | chr7:121701581-121876302 | Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv1034624 | chr7:121813180-121899703 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv1034797 | chr7:121815255-121897109 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv1028221 | chr7:121818974-121899162 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv1024868 | chr7:121818974-121899703 | Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:121832000-121838600 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 2 | chr7:121834000-121838200 | Weak transcription | iPS-18 Cell Line | embryonic stem cell |
| 3 | chr7:121834800-121839400 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
