Variant report

Variant	rs279681
Chromosome Location	chr7:121788662-121788663
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:121786887..121788984-chr7:121791394..121792980,2	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1147493	0.80[CHB][hapmap]
rs1147494	0.81[CHB][hapmap]
rs11761142	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11762921	0.80[ASN][1000 genomes]
rs11763733	0.80[ASN][1000 genomes]
rs11766185	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1206207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1206352	0.86[CHB][hapmap]
rs1206353	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs1206356	0.86[CHB][hapmap]
rs1206359	0.86[CHB][hapmap]
rs1206360	0.86[CHB][hapmap]
rs1206364	0.86[CHB][hapmap]
rs1206367	0.86[CHB][hapmap]
rs1206368	0.86[CHB][hapmap]
rs1206369	0.86[CHB][hapmap]
rs1206373	0.86[CHB][hapmap]
rs1206374	0.86[CHB][hapmap]
rs1206376	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs12374930	0.80[ASN][1000 genomes]
rs157653	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1604332	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17144133	0.90[ASN][1000 genomes]
rs1725066	0.86[CHB][hapmap]
rs1860507	0.81[ASN][1000 genomes]
rs2019876	0.80[ASN][1000 genomes]
rs2083860	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2120364	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2120365	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs279662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs279663	0.86[CHB][hapmap]
rs279666	0.86[CHB][hapmap]
rs279667	0.90[CHB][hapmap]
rs279668	0.86[CHB][hapmap]
rs279674	0.86[CHB][hapmap]
rs279677	0.86[CHB][hapmap]
rs279687	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs279693	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs279698	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs279699	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs279704	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs279706	0.81[ASN][1000 genomes]
rs56177919	0.91[ASN][1000 genomes]
rs56331846	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57562127	0.80[ASN][1000 genomes]
rs58850466	0.91[ASN][1000 genomes]
rs59536307	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60116323	0.80[ASN][1000 genomes]
rs61366730	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62474297	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62474298	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62474305	0.89[ASN][1000 genomes]
rs62474306	0.80[ASN][1000 genomes]
rs62474307	0.80[ASN][1000 genomes]
rs6959778	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73226275	0.91[ASN][1000 genomes]
rs969549	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427803	chr7:121701581-121876302	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1019004	chr7:121733372-121800380	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1034553	chr7:121734934-121800380	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv523632	chr7:121754695-121802068	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1016617	chr7:121770441-121820730	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121785000-121796800	Weak transcription	Ovary	ovary
2	chr7:121785200-121789800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr7:121785400-121791000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr7:121785400-121791800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr7:121785800-121799600	Weak transcription	Left Ventricle	heart
6	chr7:121785800-121806400	Weak transcription	Pancreas	Pancrea
7	chr7:121786200-121789200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr7:121786200-121790200	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr7:121786200-121791600	Weak transcription	Liver	Liver
10	chr7:121786600-121791000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr7:121787600-121788800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr7:121787600-121790800	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr7:121788000-121790200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:121788400-121795200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr7:121788600-121789200	Active TSS	iPS-20b Cell Line	embryonic stem cell
16	chr7:121788600-121790000	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr7:121788600-121795800	Weak transcription	Fetal Heart	heart

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