Variant report

Variant	rs279662
Chromosome Location	chr7:121801885-121801886
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:121779239..121781681-chr7:121799360..121802322,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PTPRZ1-7	chr7:121801388-121802297	NONHSAT123021

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11521039	0.85[CEU][hapmap]
rs11761142	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11762921	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11763733	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11766185	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1206207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12374930	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs157653	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1604332	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17144133	0.98[ASN][1000 genomes]
rs1995328	0.85[EUR][1000 genomes]
rs2019876	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2083860	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2120364	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2120365	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs279681	0.86[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs279687	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs279693	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs279698	0.92[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs284343	0.81[EUR][1000 genomes]
rs56177919	0.98[ASN][1000 genomes]
rs56331846	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57562127	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58850466	0.98[ASN][1000 genomes]
rs59536307	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60116323	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61366730	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62474297	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62474298	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62474305	0.96[ASN][1000 genomes]
rs62474306	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62474307	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6959778	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73226275	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427803	chr7:121701581-121876302	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv523632	chr7:121754695-121802068	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1016617	chr7:121770441-121820730	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121785800-121806400	Weak transcription	Pancreas	Pancrea
2	chr7:121797800-121811800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:121800600-121802200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr7:121800600-121802200	Enhancers	Hela-S3	cervix
5	chr7:121801400-121802000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr7:121801400-121802000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:121801400-121802000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr7:121801400-121802000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr7:121801400-121802000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr7:121801400-121802000	Enhancers	Aorta	Aorta
11	chr7:121801400-121802000	Enhancers	NH-A	brain
12	chr7:121801400-121802200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr7:121801400-121802200	Enhancers	Osteobl	bone
14	chr7:121801600-121802000	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr7:121801800-121802000	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr7:121801800-121806200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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