Variant report

Variant	rs59536307
Chromosome Location	chr7:121807705-121807706
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:121798168..121800112-chr7:121805827..121808300,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000226636	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11761142	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11762921	0.88[EUR][1000 genomes]
rs11763733	0.88[EUR][1000 genomes]
rs11766185	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11772230	0.82[EUR][1000 genomes]
rs1206207	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12374930	0.88[EUR][1000 genomes]
rs157653	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1604332	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1995328	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2019876	0.88[EUR][1000 genomes]
rs2083860	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2120364	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2120365	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs279662	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs279681	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs279687	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs279693	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs279698	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56331846	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57562127	0.87[EUR][1000 genomes]
rs60116323	0.87[EUR][1000 genomes]
rs61366730	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62474297	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62474298	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62474306	0.88[EUR][1000 genomes]
rs62474307	0.88[EUR][1000 genomes]
rs6959778	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427803	chr7:121701581-121876302	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1016617	chr7:121770441-121820730	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121797800-121811800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:121806200-121807800	Enhancers	Hela-S3	cervix
3	chr7:121806400-121807800	Enhancers	Placenta Amnion	Placenta Amnion
4	chr7:121807600-121807800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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