Variant report

Variant	rs6959778
Chromosome Location	chr7:121812584-121812585
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11761142	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11762921	0.89[EUR][1000 genomes]
rs11763733	0.89[EUR][1000 genomes]
rs11766185	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11772230	0.82[EUR][1000 genomes]
rs1206207	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12374930	0.89[EUR][1000 genomes]
rs157653	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1604332	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1995328	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2019876	0.89[EUR][1000 genomes]
rs2083860	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2120364	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2120365	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs279662	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs279681	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs279687	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs279693	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs279698	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56331846	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs57562127	0.88[EUR][1000 genomes]
rs59536307	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60116323	0.88[EUR][1000 genomes]
rs61366730	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62474297	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62474298	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62474306	0.89[EUR][1000 genomes]
rs62474307	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427803	chr7:121701581-121876302	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1016617	chr7:121770441-121820730	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121810200-121825800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:121811400-121812600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr7:121811600-121812600	Enhancers	H9 Cell Line	embryonic stem cell
4	chr7:121811800-121812800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr7:121812000-121812600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr7:121812000-121812600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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