Variant report

Variant	rs17144272
Chromosome Location	chr7:121985782-121985783
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10258476	1.00[AMR][1000 genomes]
rs10262144	1.00[AMR][1000 genomes]
rs12333764	1.00[AMR][1000 genomes]
rs17144381	1.00[AMR][1000 genomes]
rs17144402	1.00[AMR][1000 genomes]
rs28415072	1.00[AMR][1000 genomes]
rs28651256	1.00[AMR][1000 genomes]
rs57556241	1.00[AMR][1000 genomes]
rs58309512	1.00[AMR][1000 genomes]
rs73717648	1.00[AMR][1000 genomes]
rs73717662	1.00[AMR][1000 genomes]
rs73717667	1.00[AMR][1000 genomes]
rs73717679	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5931	chr7:121944137-121988594	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121957400-121990800	Weak transcription	Pancreas	Pancrea
2	chr7:121957400-122051200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr7:121958800-121994400	Weak transcription	Lung	lung
4	chr7:121962600-121993000	Weak transcription	Ovary	ovary
5	chr7:121974400-121987200	Weak transcription	Fetal Intestine Large	intestine
6	chr7:121980800-122018600	Weak transcription	Left Ventricle	heart
7	chr7:121983400-121985800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr7:121984200-121997800	Weak transcription	Fetal Lung	lung
9	chr7:121984800-121989600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr7:121984800-121989800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr7:121984800-122002200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr7:121985000-121989600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr7:121985200-121989400	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr7:121985200-121989800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr7:121985400-121989800	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr7:121985600-121992200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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