Variant report

Variant	rs17144402
Chromosome Location	chr7:122056250-122056251
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10258476	1.00[AMR][1000 genomes]
rs10262144	1.00[AMR][1000 genomes]
rs12333764	1.00[AMR][1000 genomes]
rs17144272	1.00[AMR][1000 genomes]
rs17144381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28415072	1.00[AMR][1000 genomes]
rs28651256	1.00[AMR][1000 genomes]
rs57556241	1.00[AMR][1000 genomes]
rs58309512	1.00[AMR][1000 genomes]
rs73717648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717662	1.00[AMR][1000 genomes]
rs73717667	1.00[AMR][1000 genomes]
rs73717679	1.00[AMR][1000 genomes]
rs73719708	1.00[AMR][1000 genomes]
rs73719715	1.00[AMR][1000 genomes]
rs73719718	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122003200-122061000	Weak transcription	Aorta	Aorta
2	chr7:122007400-122073000	Weak transcription	Lung	lung
3	chr7:122013800-122081800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr7:122022400-122095000	Weak transcription	Gastric	stomach
5	chr7:122033600-122061000	Weak transcription	Pancreas	Pancrea
6	chr7:122040600-122057800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr7:122045800-122063200	Weak transcription	Ovary	ovary
8	chr7:122047000-122155400	Weak transcription	Left Ventricle	heart
9	chr7:122047800-122056400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr7:122048800-122056600	Weak transcription	HepG2	liver
11	chr7:122053000-122059800	Weak transcription	Right Atrium	heart
12	chr7:122053400-122056400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr7:122053800-122056400	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr7:122053800-122056600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr7:122053800-122057400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr7:122054200-122056400	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr7:122054800-122057800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:122055000-122057800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr7:122055400-122056600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr7:122055400-122057600	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr7:122055800-122071200	Weak transcription	Fetal Lung	lung
22	chr7:122056000-122057000	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr7:122056000-122058000	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr7:122056200-122122200	Weak transcription	Liver	Liver

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