Variant report

Variant	rs28415072
Chromosome Location	chr7:122157453-122157454
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10258476	1.00[AMR][1000 genomes]
rs10262144	1.00[AMR][1000 genomes]
rs12333764	1.00[AMR][1000 genomes]
rs17144272	1.00[AMR][1000 genomes]
rs17144381	1.00[AMR][1000 genomes]
rs17144402	1.00[AMR][1000 genomes]
rs2159828	1.00[AMR][1000 genomes]
rs28651256	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56413347	1.00[AMR][1000 genomes]
rs57556241	1.00[AMR][1000 genomes]
rs58309512	1.00[AMR][1000 genomes]
rs73717648	1.00[AMR][1000 genomes]
rs73717662	1.00[AMR][1000 genomes]
rs73717667	1.00[AMR][1000 genomes]
rs73717679	1.00[AMR][1000 genomes]
rs73719708	1.00[AMR][1000 genomes]
rs73719715	1.00[AMR][1000 genomes]
rs73719718	1.00[AMR][1000 genomes]
rs73719745	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122140200-122159000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:122154000-122160800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:122155800-122157600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr7:122155800-122171000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:122156200-122157600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr7:122156200-122157800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr7:122156400-122158800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr7:122156600-122157800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr7:122156600-122158600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:122157200-122161800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr7:122157200-122162000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr7:122157200-122162200	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr7:122157400-122162200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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