Variant report

Variant	rs2159828
Chromosome Location	chr7:122300427-122300428
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:122293297..122295809-chr7:122299127..122301217,2	MCF-7	breast:
2	chr7:122296179..122297714-chr7:122297804..122300438,2	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10258476	1.00[AMR][1000 genomes]
rs10262144	1.00[AMR][1000 genomes]
rs12333764	1.00[AMR][1000 genomes]
rs28415072	1.00[AMR][1000 genomes]
rs28651256	1.00[AMR][1000 genomes]
rs56029436	1.00[AMR][1000 genomes]
rs56148137	1.00[AMR][1000 genomes]
rs56150634	1.00[AMR][1000 genomes]
rs56380009	1.00[AMR][1000 genomes]
rs56413347	1.00[AMR][1000 genomes]
rs57556241	1.00[AMR][1000 genomes]
rs57823101	1.00[AMR][1000 genomes]
rs58138081	1.00[AMR][1000 genomes]
rs58309512	1.00[AMR][1000 genomes]
rs58923447	1.00[AMR][1000 genomes]
rs60519662	1.00[AMR][1000 genomes]
rs6466840	1.00[AMR][1000 genomes]
rs73717662	1.00[AMR][1000 genomes]
rs73717667	1.00[AMR][1000 genomes]
rs73717679	1.00[AMR][1000 genomes]
rs73718003	1.00[AMR][1000 genomes]
rs73718004	1.00[AMR][1000 genomes]
rs73718005	1.00[AMR][1000 genomes]
rs73718007	1.00[AMR][1000 genomes]
rs73718011	1.00[AMR][1000 genomes]
rs73718013	1.00[AMR][1000 genomes]
rs73718015	1.00[AMR][1000 genomes]
rs73718017	1.00[AMR][1000 genomes]
rs73718019	1.00[AMR][1000 genomes]
rs73718020	1.00[AMR][1000 genomes]
rs73718021	1.00[AMR][1000 genomes]
rs73718022	1.00[AMR][1000 genomes]
rs73718023	1.00[AMR][1000 genomes]
rs73718024	1.00[AMR][1000 genomes]
rs73718026	1.00[AMR][1000 genomes]
rs73718027	1.00[AMR][1000 genomes]
rs73718028	1.00[AMR][1000 genomes]
rs73718030	1.00[AMR][1000 genomes]
rs73718032	1.00[AMR][1000 genomes]
rs73718044	1.00[AMR][1000 genomes]
rs73719708	1.00[AMR][1000 genomes]
rs73719715	1.00[AMR][1000 genomes]
rs73719718	1.00[AMR][1000 genomes]
rs73719745	1.00[AMR][1000 genomes]
rs73719762	1.00[AMR][1000 genomes]
rs73719765	1.00[AMR][1000 genomes]
rs73719766	1.00[AMR][1000 genomes]
rs73719767	1.00[AMR][1000 genomes]
rs73719769	1.00[AMR][1000 genomes]
rs73719770	1.00[AMR][1000 genomes]
rs73719772	1.00[AMR][1000 genomes]
rs7787644	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv532178	chr7:122203056-122978846	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv532179	chr7:122249639-122986259	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv532181	chr7:122291571-122684719	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122293600-122318600	Weak transcription	Lung	lung
2	chr7:122294000-122314400	Weak transcription	Fetal Lung	lung

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