Variant report

Variant	rs56380009
Chromosome Location	chr7:122379695-122379696
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:122379171..122379744-chr7:122390634..122391405,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs2159828	1.00[AMR][1000 genomes]
rs56029436	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56148137	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56150634	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56413347	1.00[AMR][1000 genomes]
rs57556241	1.00[AMR][1000 genomes]
rs57823101	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58138081	1.00[AMR][1000 genomes]
rs58923447	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60519662	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6466840	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717679	1.00[AMR][1000 genomes]
rs73718003	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73718004	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73718005	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73718007	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73718011	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73718013	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73718015	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73718017	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73718019	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73718020	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73718021	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73718022	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73718023	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73718024	1.00[AMR][1000 genomes]
rs73718026	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73718027	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73718028	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73718030	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73718032	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73718044	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73718047	1.00[AMR][1000 genomes]
rs73719708	1.00[AMR][1000 genomes]
rs73719715	1.00[AMR][1000 genomes]
rs73719718	1.00[AMR][1000 genomes]
rs73719745	1.00[AMR][1000 genomes]
rs73719762	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73719765	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73719766	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73719767	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73719769	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73719770	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73719772	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73719774	0.91[AFR][1000 genomes]
rs7787644	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532178	chr7:122203056-122978846	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv532179	chr7:122249639-122986259	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv532181	chr7:122291571-122684719	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	nsv532218	chr7:122360779-122934247	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1033520	chr7:122366544-122992937	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122366000-122384200	Weak transcription	Pancreas	Pancrea
2	chr7:122372000-122386600	Weak transcription	Ovary	ovary
3	chr7:122374800-122380000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr7:122375000-122379800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr7:122375000-122380000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr7:122377000-122380400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr7:122377200-122380000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr7:122377800-122380000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr7:122378000-122393400	Weak transcription	Fetal Lung	lung
10	chr7:122378200-122383400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr7:122378200-122391600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr7:122378800-122380600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr7:122379400-122380600	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr7:122379400-122382600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr7:122379600-122380000	Weak transcription	H1 Cell Line	embryonic stem cell

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