Variant report

Variant	rs73719745
Chromosome Location	chr7:122336073-122336074
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:122333145..122337582-chr7:122337646..122340528,4	K562	blood:

Variant related genes	Relation type
ENSG00000188050	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10258476	1.00[AMR][1000 genomes]
rs10262144	1.00[AMR][1000 genomes]
rs12333764	1.00[AMR][1000 genomes]
rs2159828	1.00[AMR][1000 genomes]
rs28415072	1.00[AMR][1000 genomes]
rs28651256	1.00[AMR][1000 genomes]
rs56029436	1.00[AMR][1000 genomes]
rs56148137	1.00[AMR][1000 genomes]
rs56150634	1.00[AMR][1000 genomes]
rs56380009	1.00[AMR][1000 genomes]
rs56413347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57556241	1.00[AMR][1000 genomes]
rs57823101	1.00[AMR][1000 genomes]
rs58138081	1.00[AMR][1000 genomes]
rs58309512	1.00[AMR][1000 genomes]
rs58923447	1.00[AMR][1000 genomes]
rs60519662	1.00[AMR][1000 genomes]
rs6466840	1.00[AMR][1000 genomes]
rs73717662	1.00[AMR][1000 genomes]
rs73717667	1.00[AMR][1000 genomes]
rs73717679	1.00[AMR][1000 genomes]
rs73718003	1.00[AMR][1000 genomes]
rs73718004	1.00[AMR][1000 genomes]
rs73718005	1.00[AMR][1000 genomes]
rs73718007	1.00[AMR][1000 genomes]
rs73718011	1.00[AMR][1000 genomes]
rs73718013	1.00[AMR][1000 genomes]
rs73718015	1.00[AMR][1000 genomes]
rs73718017	1.00[AMR][1000 genomes]
rs73718019	1.00[AMR][1000 genomes]
rs73718020	1.00[AMR][1000 genomes]
rs73718021	1.00[AMR][1000 genomes]
rs73718022	1.00[AMR][1000 genomes]
rs73718023	1.00[AMR][1000 genomes]
rs73718024	1.00[AMR][1000 genomes]
rs73718026	1.00[AMR][1000 genomes]
rs73718027	1.00[AMR][1000 genomes]
rs73718028	1.00[AMR][1000 genomes]
rs73718030	1.00[AMR][1000 genomes]
rs73718032	1.00[AMR][1000 genomes]
rs73718044	1.00[AMR][1000 genomes]
rs73718047	1.00[AMR][1000 genomes]
rs73719708	1.00[AMR][1000 genomes]
rs73719715	1.00[AMR][1000 genomes]
rs73719718	1.00[AMR][1000 genomes]
rs73719762	1.00[AMR][1000 genomes]
rs73719765	1.00[AMR][1000 genomes]
rs73719766	1.00[AMR][1000 genomes]
rs73719767	1.00[AMR][1000 genomes]
rs73719769	1.00[AMR][1000 genomes]
rs73719770	1.00[AMR][1000 genomes]
rs73719772	1.00[AMR][1000 genomes]
rs7787644	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv532178	chr7:122203056-122978846	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv532179	chr7:122249639-122986259	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv532181	chr7:122291571-122684719	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
5	nsv817238	chr7:122325864-122371594	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122329600-122343400	Weak transcription	Ovary	ovary
2	chr7:122330000-122343000	Weak transcription	Spleen	Spleen
3	chr7:122330000-122347000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr7:122332800-122342200	Weak transcription	Left Ventricle	heart
5	chr7:122333000-122350400	Weak transcription	Gastric	stomach
6	chr7:122335000-122336600	Enhancers	HepG2	liver
7	chr7:122335000-122336800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:122335600-122336600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:122335600-122336800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr7:122335800-122336200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr7:122335800-122336200	Enhancers	Fetal Heart	heart
12	chr7:122335800-122336400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr7:122335800-122336600	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr7:122336000-122336200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr7:122336000-122336400	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr7:122336000-122336400	Enhancers	H1 Cell Line	embryonic stem cell
17	chr7:122336000-122336400	Enhancers	Fetal Lung	lung
18	chr7:122336000-122336600	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr7:122336000-122336600	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr7:122336000-122336600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr7:122336000-122336600	Enhancers	Pancreas	Pancrea
22	chr7:122336000-122336600	Enhancers	Right Atrium	heart
23	chr7:122336000-122336800	Enhancers	H9 Cell Line	embryonic stem cell

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