Variant report

Variant	rs57556241
Chromosome Location	chr7:122205375-122205376
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10258476	1.00[AMR][1000 genomes]
rs10262144	1.00[AMR][1000 genomes]
rs12333764	1.00[AMR][1000 genomes]
rs17144272	1.00[AMR][1000 genomes]
rs17144381	1.00[AMR][1000 genomes]
rs17144402	1.00[AMR][1000 genomes]
rs2159828	1.00[AMR][1000 genomes]
rs28415072	1.00[AMR][1000 genomes]
rs28651256	1.00[AMR][1000 genomes]
rs56148137	1.00[AMR][1000 genomes]
rs56380009	1.00[AMR][1000 genomes]
rs56413347	1.00[AMR][1000 genomes]
rs58309512	1.00[AMR][1000 genomes]
rs60519662	1.00[AMR][1000 genomes]
rs73717648	1.00[AMR][1000 genomes]
rs73717662	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717667	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73719708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73719715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73719718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73719745	1.00[AMR][1000 genomes]
rs73719762	1.00[AMR][1000 genomes]
rs73719765	1.00[AMR][1000 genomes]
rs73719766	1.00[AMR][1000 genomes]
rs73719767	1.00[AMR][1000 genomes]
rs73719769	1.00[AMR][1000 genomes]
rs73719770	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv532178	chr7:122203056-122978846	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122184400-122226000	Weak transcription	Left Ventricle	heart
2	chr7:122193200-122219200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr7:122197800-122218600	Weak transcription	Lung	lung
4	chr7:122198000-122229000	Weak transcription	Fetal Lung	lung
5	chr7:122200600-122219400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr7:122204400-122207800	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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