Variant report
Variant | rs17149848 |
---|---|
Chromosome Location | chr7:126133668-126133669 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | 7:126130122-126133705..7:126890676-126899918 | H1-hESC | embryonic stem cell: | embryo |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000179603 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10224336 | 1.00[EUR][1000 genomes] |
rs10487447 | 1.00[EUR][1000 genomes] |
rs11974803 | 1.00[EUR][1000 genomes] |
rs1419472 | 0.91[YRI][hapmap] |
rs1419521 | 0.91[YRI][hapmap] |
rs17149774 | 0.85[CHB][hapmap];0.82[JPT][hapmap];1.00[EUR][1000 genomes] |
rs17149779 | 0.85[CHB][hapmap];1.00[EUR][1000 genomes] |
rs17149858 | 1.00[EUR][1000 genomes] |
rs17149911 | 1.00[CHB][hapmap];0.85[JPT][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs2299455 | 1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs57281612 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs58516151 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs60811071 | 1.00[EUR][1000 genomes] |
rs61347840 | 1.00[EUR][1000 genomes] |
rs6942895 | 1.00[EUR][1000 genomes] |
rs73720987 | 1.00[EUR][1000 genomes] |
rs73722604 | 1.00[EUR][1000 genomes] |
rs7788387 | 1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv529300 | chr7:125669493-126587858 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
2 | nsv1023465 | chr7:125873329-126191422 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
3 | nsv1028204 | chr7:125897362-126225444 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
4 | nsv539118 | chr7:125897362-126225444 | Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
5 | nsv1033349 | chr7:126010250-126168918 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
6 | nsv1032938 | chr7:126067684-126587859 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
7 | nsv539119 | chr7:126067684-126587859 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
8 | nsv436533 | chr7:126130550-126135725 | Enhancers Weak transcription Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:126133200-126136600 | Enhancers | Fetal Heart | heart |
2 | chr7:126133400-126134000 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |
3 | chr7:126133600-126134400 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |