Variant report
Variant | rs17149911 |
---|---|
Chromosome Location | chr7:126161592-126161593 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:3 , 50 per page) page:
1
No data |
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Variant related genes | Relation type |
---|---|
ENSG00000179562 | Chromatin interaction |
ENSG00000179603 | Chromatin interaction |
ENSG00000048405 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10224336 | 1.00[EUR][1000 genomes] |
rs10487447 | 1.00[EUR][1000 genomes] |
rs11974803 | 1.00[EUR][1000 genomes] |
rs1419472 | 1.00[YRI][hapmap] |
rs1419521 | 1.00[YRI][hapmap] |
rs17149774 | 0.85[CHB][hapmap];1.00[EUR][1000 genomes] |
rs17149779 | 0.85[CHB][hapmap];1.00[EUR][1000 genomes] |
rs17149848 | 1.00[CHB][hapmap];0.85[JPT][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs17149858 | 1.00[EUR][1000 genomes] |
rs2299455 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4728048 | 1.00[EUR][1000 genomes] |
rs57281612 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs58516151 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs60676251 | 1.00[EUR][1000 genomes] |
rs60811071 | 1.00[EUR][1000 genomes] |
rs61347840 | 1.00[EUR][1000 genomes] |
rs61514376 | 1.00[EUR][1000 genomes] |
rs6942895 | 1.00[EUR][1000 genomes] |
rs73720987 | 1.00[EUR][1000 genomes] |
rs73722604 | 1.00[EUR][1000 genomes] |
rs7788387 | 1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv529300 | chr7:125669493-126587858 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
2 | nsv1023465 | chr7:125873329-126191422 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
3 | nsv1028204 | chr7:125897362-126225444 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
4 | nsv539118 | chr7:125897362-126225444 | Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
5 | nsv1033349 | chr7:126010250-126168918 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
6 | nsv1032938 | chr7:126067684-126587859 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
7 | nsv539119 | chr7:126067684-126587859 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
8 | nsv521803 | chr7:126149319-126219766 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:126157600-126170400 | Weak transcription | Left Ventricle | heart |