Variant report

Variant	rs17153487
Chromosome Location	chr7:79776249-79776250
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10486928	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11766554	0.82[CHB][hapmap];0.81[AFR][1000 genomes]
rs11980616	0.82[CHB][hapmap]
rs12706644	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17153492	1.00[JPT][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17153496	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2285755	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6980462	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79768600-79780400	Weak transcription	Stomach Mucosa	stomach
2	chr7:79768800-79780200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:79768800-79780200	Weak transcription	Small Intestine	intestine
4	chr7:79770800-79779200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:79771200-79777600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr7:79771600-79777600	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr7:79771800-79777800	Enhancers	Colon Smooth Muscle	Colon
8	chr7:79772200-79776600	Enhancers	Fetal Brain Female	brain
9	chr7:79772200-79777600	Enhancers	Brain Hippocampus Middle	brain
10	chr7:79772400-79777400	Enhancers	Rectal Smooth Muscle	rectum
11	chr7:79772800-79780800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr7:79773200-79777600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr7:79773600-79777600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr7:79773800-79777200	Enhancers	Brain Angular Gyrus	brain
15	chr7:79774600-79776400	Enhancers	Fetal Heart	heart
16	chr7:79774600-79777600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr7:79775000-79776400	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr7:79775000-79776600	Enhancers	Primary hematopoietic stem cells	blood
19	chr7:79775000-79777000	Enhancers	Fetal Kidney	kidney
20	chr7:79775000-79777400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr7:79775000-79778400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr7:79775000-79779200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr7:79775200-79777000	Enhancers	Fetal Muscle Leg	muscle
24	chr7:79775200-79777000	Enhancers	Placenta	Placenta
25	chr7:79775200-79777800	Enhancers	Muscle Satellite Cultured Cells	--
26	chr7:79775200-79777800	Enhancers	HMEC	breast
27	chr7:79775400-79776400	Weak transcription	Brain Germinal Matrix	brain
28	chr7:79775400-79776800	Enhancers	NHEK	skin
29	chr7:79775400-79780000	Weak transcription	Duodenum Mucosa	Duodenum
30	chr7:79775600-79776600	Weak transcription	Brain Substantia Nigra	brain
31	chr7:79775600-79776600	Weak transcription	Ovary	ovary
32	chr7:79775600-79776800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr7:79775600-79776800	Weak transcription	Brain Anterior Caudate	brain
34	chr7:79775600-79776800	Weak transcription	NH-A	brain
35	chr7:79775600-79776800	Enhancers	NHDF-Ad	bronchial
36	chr7:79775600-79777400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr7:79775600-79777600	Enhancers	Adipose Nuclei	Adipose
38	chr7:79775600-79777600	Enhancers	Fetal Brain Male	brain
39	chr7:79775600-79778400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr7:79775600-79778600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr7:79775600-79779800	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr7:79775600-79779800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr7:79775600-79780000	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr7:79775600-79780000	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr7:79775600-79780000	Enhancers	Hela-S3	cervix
46	chr7:79775600-79780200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr7:79775600-79780200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr7:79775600-79780200	Weak transcription	Gastric	stomach
49	chr7:79775600-79782800	Weak transcription	Stomach Smooth Muscle	stomach
50	chr7:79775600-79787800	Weak transcription	Esophagus	oesophagus

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