Variant report

Variant	rs17153496
Chromosome Location	chr7:79779284-79779285
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10486928	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11766554	0.82[CHB][hapmap];0.87[YRI][hapmap];0.81[AFR][1000 genomes]
rs11980616	0.82[CHB][hapmap]
rs12706644	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17153487	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17153492	1.00[JPT][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2285755	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6980462	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79768600-79780400	Weak transcription	Stomach Mucosa	stomach
2	chr7:79768800-79780200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:79768800-79780200	Weak transcription	Small Intestine	intestine
4	chr7:79772800-79780800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr7:79775400-79780000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr7:79775600-79779800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr7:79775600-79779800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr7:79775600-79780000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr7:79775600-79780000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr7:79775600-79780000	Enhancers	Hela-S3	cervix
11	chr7:79775600-79780200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr7:79775600-79780200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr7:79775600-79780200	Weak transcription	Gastric	stomach
14	chr7:79775600-79782800	Weak transcription	Stomach Smooth Muscle	stomach
15	chr7:79775600-79787800	Weak transcription	Esophagus	oesophagus
16	chr7:79775600-79787800	Enhancers	Fetal Lung	lung
17	chr7:79775800-79780000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr7:79775800-79780200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr7:79776000-79779800	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr7:79776000-79779800	Weak transcription	Fetal Stomach	stomach
21	chr7:79776000-79780000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr7:79776000-79780200	Weak transcription	Psoas Muscle	Psoas
23	chr7:79776200-79779400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr7:79776200-79780200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr7:79776200-79780400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr7:79776200-79796200	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr7:79776600-79786000	Weak transcription	Fetal Brain Female	brain
28	chr7:79777000-79779600	Weak transcription	Fetal Kidney	kidney
29	chr7:79777000-79779800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr7:79777000-79780000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr7:79777000-79780200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr7:79777000-79780200	Weak transcription	Placenta	Placenta
33	chr7:79777000-79780200	Weak transcription	Ovary	ovary
34	chr7:79777200-79780200	Weak transcription	Liver	Liver
35	chr7:79777400-79780000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr7:79777400-79780000	Weak transcription	NH-A	brain
37	chr7:79777400-79780200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr7:79777400-79785200	Enhancers	NHDF-Ad	bronchial
39	chr7:79777600-79779800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr7:79777600-79779800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr7:79777600-79779800	Weak transcription	Adipose Nuclei	Adipose
42	chr7:79777600-79779800	Weak transcription	Fetal Brain Male	brain
43	chr7:79777600-79780200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr7:79777600-79780200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr7:79777600-79780400	Weak transcription	HSMMtube	muscle
46	chr7:79777600-79791000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr7:79777800-79779800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr7:79777800-79779800	Weak transcription	HMEC	breast
49	chr7:79777800-79780000	Weak transcription	Osteobl	bone
50	chr7:79777800-79780200	Weak transcription	Muscle Satellite Cultured Cells	--

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