Variant report

Variant	rs2285755
Chromosome Location	chr7:79780324-79780325
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10486928	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11766554	0.82[CHB][hapmap]
rs11980616	0.82[CHB][hapmap]
rs12706644	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17153487	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17153492	1.00[JPT][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17153496	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6980462	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79768600-79780400	Weak transcription	Stomach Mucosa	stomach
2	chr7:79772800-79780800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr7:79775600-79782800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr7:79775600-79787800	Weak transcription	Esophagus	oesophagus
5	chr7:79775600-79787800	Enhancers	Fetal Lung	lung
6	chr7:79776200-79780400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:79776200-79796200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr7:79776600-79786000	Weak transcription	Fetal Brain Female	brain
9	chr7:79777400-79785200	Enhancers	NHDF-Ad	bronchial
10	chr7:79777600-79780400	Weak transcription	HSMMtube	muscle
11	chr7:79777600-79791000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr7:79777800-79780400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr7:79778200-79781400	Enhancers	Brain Cingulate Gyrus	brain
14	chr7:79778400-79781400	Enhancers	Brain Substantia Nigra	brain
15	chr7:79778400-79781600	Enhancers	Rectal Smooth Muscle	rectum
16	chr7:79778600-79781200	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr7:79778600-79782600	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr7:79778600-79783600	Enhancers	Primary hematopoietic stem cells	blood
19	chr7:79778800-79780400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr7:79778800-79780800	Enhancers	Brain Anterior Caudate	brain
21	chr7:79778800-79781400	Enhancers	Brain Angular Gyrus	brain
22	chr7:79778800-79781800	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr7:79779200-79781600	Enhancers	H9 Cell Line	embryonic stem cell
24	chr7:79779200-79784600	Enhancers	NHLF	lung
25	chr7:79779400-79782000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr7:79779600-79781200	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr7:79779600-79781400	Enhancers	Brain Hippocampus Middle	brain
28	chr7:79779600-79782600	Weak transcription	Colon Smooth Muscle	Colon
29	chr7:79779800-79780400	Enhancers	Fetal Brain Male	brain
30	chr7:79779800-79781200	Enhancers	H1 Cell Line	embryonic stem cell
31	chr7:79779800-79781400	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr7:79779800-79781400	Enhancers	Adipose Nuclei	Adipose
33	chr7:79779800-79781600	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr7:79779800-79781600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr7:79779800-79781600	Enhancers	Fetal Stomach	stomach
36	chr7:79779800-79781800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr7:79779800-79781800	Enhancers	HMEC	breast
38	chr7:79779800-79782000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr7:79780000-79780400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr7:79780000-79780400	Enhancers	Rectal Mucosa Donor 31	rectum
41	chr7:79780000-79780400	Flanking Active TSS	Hela-S3	cervix
42	chr7:79780000-79780600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr7:79780000-79780600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr7:79780000-79780600	Enhancers	Duodenum Mucosa	Duodenum
45	chr7:79780000-79781200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr7:79780000-79781600	Enhancers	Primary T cells from cord blood	blood
47	chr7:79780000-79781600	Enhancers	NH-A	brain
48	chr7:79780000-79781600	Flanking Active TSS	NHEK	skin
49	chr7:79780000-79781800	Enhancers	ES-I3 Cell Line	embryonic stem cell
50	chr7:79780000-79781800	Enhancers	HUES6 Cell Line	embryonic stem cell

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