Variant report

Variant	rs11980616
Chromosome Location	chr7:79799613-79799614
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10486928	0.82[CHB][hapmap]
rs11766554	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11983471	0.82[YRI][hapmap]
rs12706644	0.82[CHB][hapmap]
rs17153487	0.82[CHB][hapmap]
rs17153496	0.82[CHB][hapmap]
rs17153558	1.00[JPT][hapmap]
rs2285755	0.82[CHB][hapmap]
rs2714449	1.00[JPT][hapmap]
rs2714452	1.00[JPT][hapmap]
rs2714454	1.00[JPT][hapmap]
rs2714467	1.00[JPT][hapmap]
rs34456457	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58104135	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60660263	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62460732	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62460733	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62460734	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62462668	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62462670	1.00[ASN][1000 genomes]
rs62462672	0.80[EUR][1000 genomes]
rs62462676	0.80[EUR][1000 genomes]
rs6980462	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79781200-79803200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr7:79783800-79806600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr7:79788600-79799800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr7:79789400-79814200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr7:79791600-79801400	Weak transcription	Ovary	ovary
6	chr7:79792800-79809000	Weak transcription	Fetal Kidney	kidney
7	chr7:79793200-79802000	Weak transcription	Brain Angular Gyrus	brain
8	chr7:79794400-79802200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr7:79795400-79816000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr7:79795600-79809000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr7:79796400-79816000	Weak transcription	Stomach Smooth Muscle	stomach
12	chr7:79796600-79802000	Weak transcription	Brain Substantia Nigra	brain
13	chr7:79796800-79801600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr7:79796800-79802200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr7:79797600-79801600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr7:79798400-79802600	ZNF genes & repeats	A549	lung
17	chr7:79799000-79800800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr7:79799000-79803400	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr7:79799200-79800800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
20	chr7:79799200-79800800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
21	chr7:79799200-79802600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr7:79799400-79799800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr7:79799400-79799800	ZNF genes & repeats	Brain Hippocampus Middle	brain
24	chr7:79799400-79800600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr7:79799400-79803400	Weak transcription	Aorta	Aorta
26	chr7:79799600-79800200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr7:79799600-79800200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr7:79799600-79800800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr7:79799600-79801600	Weak transcription	Fetal Lung	lung

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