Variant report

Variant	rs17153546
Chromosome Location	chr7:79810527-79810528
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17153514	0.87[YRI][hapmap];0.90[AFR][1000 genomes]
rs17153549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17153555	1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73378647	0.90[AFR][1000 genomes]
rs73378654	0.90[AFR][1000 genomes]
rs73378656	0.90[AFR][1000 genomes]
rs73378659	0.95[AFR][1000 genomes]
rs73378663	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73378668	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73378672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73378676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73378688	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73378694	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79789400-79814200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:79795400-79816000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr7:79796400-79816000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr7:79801800-79840400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr7:79802400-79813200	Weak transcription	Placenta	Placenta
6	chr7:79802600-79820200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr7:79803200-79812000	Weak transcription	NHEK	skin
8	chr7:79803200-79812200	Weak transcription	Ovary	ovary
9	chr7:79803400-79811800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr7:79803400-79812000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr7:79804800-79813200	Weak transcription	Left Ventricle	heart
12	chr7:79806000-79811200	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr7:79806000-79816000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr7:79806800-79814800	Enhancers	Brain Substantia Nigra	brain
15	chr7:79807200-79812000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr7:79807200-79812000	Weak transcription	A549	lung
17	chr7:79807200-79813200	Weak transcription	Fetal Muscle Leg	muscle
18	chr7:79807200-79829200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr7:79807200-79833400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr7:79807400-79812000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr7:79807400-79812800	Weak transcription	Colon Smooth Muscle	Colon
22	chr7:79807600-79810600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr7:79807600-79810800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr7:79807600-79816200	Weak transcription	Osteobl	bone
25	chr7:79807800-79816000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr7:79807800-79842000	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr7:79808000-79812000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr7:79808000-79812000	Weak transcription	NHLF	lung
29	chr7:79808600-79810600	Enhancers	Brain Inferior Temporal Lobe	brain
30	chr7:79808600-79813800	Enhancers	Brain Cingulate Gyrus	brain
31	chr7:79809000-79810600	Enhancers	Brain Angular Gyrus	brain
32	chr7:79809400-79810600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr7:79809400-79811000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr7:79809400-79815600	Weak transcription	Liver	Liver
35	chr7:79809600-79811600	Enhancers	Primary T cells from cord blood	blood
36	chr7:79809600-79812000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr7:79809600-79812000	Weak transcription	NHDF-Ad	bronchial
38	chr7:79809600-79847600	Weak transcription	HUVEC	blood vessel
39	chr7:79809800-79812000	Weak transcription	Fetal Lung	lung
40	chr7:79809800-79815400	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr7:79810000-79810800	Weak transcription	Primary hematopoietic stem cells	blood
42	chr7:79810000-79812400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr7:79810000-79813200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr7:79810000-79814800	Weak transcription	Brain Germinal Matrix	brain
45	chr7:79810000-79815800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr7:79810200-79810800	Weak transcription	Gastric	stomach
47	chr7:79810200-79811400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr7:79810200-79812000	Enhancers	HUES64 Cell Line	embryonic stem cell
49	chr7:79810200-79812000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr7:79810200-79813200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links