Variant report

Variant	rs17153555
Chromosome Location	chr7:79818277-79818278
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17153546	1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17153549	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73378663	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73378668	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73378672	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73378676	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73378688	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73378694	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79801800-79840400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr7:79802600-79820200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr7:79807200-79829200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr7:79807200-79833400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr7:79807800-79842000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr7:79809600-79847600	Weak transcription	HUVEC	blood vessel
7	chr7:79810400-79818400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr7:79811600-79845000	Weak transcription	Primary T cells from cord blood	blood
9	chr7:79812400-79827800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr7:79812400-79827800	Weak transcription	NHEK	skin
11	chr7:79812400-79828200	Weak transcription	HMEC	breast
12	chr7:79813200-79818800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr7:79813400-79829000	Weak transcription	Fetal Muscle Leg	muscle
14	chr7:79813800-79828000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr7:79814200-79818400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr7:79814200-79820400	Weak transcription	Left Ventricle	heart
17	chr7:79814200-79842600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr7:79814400-79818600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr7:79814600-79819200	Enhancers	Fetal Brain Male	brain
20	chr7:79815000-79830600	Weak transcription	Placenta	Placenta
21	chr7:79815000-79848200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr7:79815000-79850200	Weak transcription	Lung	lung
23	chr7:79815200-79859600	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr7:79815600-79819200	Enhancers	Liver	Liver
25	chr7:79816000-79819000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr7:79816200-79846800	Weak transcription	Esophagus	oesophagus
27	chr7:79816400-79819200	Enhancers	Brain Angular Gyrus	brain
28	chr7:79816400-79854800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr7:79816600-79826000	Weak transcription	Rectal Smooth Muscle	rectum
30	chr7:79816800-79820400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr7:79816800-79830600	Weak transcription	Gastric	stomach
32	chr7:79816800-79831800	Weak transcription	Hela-S3	cervix
33	chr7:79817000-79819200	Enhancers	Brain Substantia Nigra	brain
34	chr7:79817000-79819400	Enhancers	Fetal Lung	lung
35	chr7:79817000-79819600	Enhancers	Brain Cingulate Gyrus	brain
36	chr7:79817000-79820000	Weak transcription	A549	lung
37	chr7:79817000-79820400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr7:79817000-79821000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr7:79817000-79826600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr7:79817000-79828000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr7:79817000-79828600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr7:79817000-79829800	Weak transcription	Osteobl	bone
43	chr7:79817000-79830600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr7:79817000-79833000	Weak transcription	HSMM	muscle
45	chr7:79817000-79841000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr7:79817000-79842400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr7:79817000-79851200	Weak transcription	Aorta	Aorta
48	chr7:79817200-79819200	Enhancers	Pancreatic Islets	Pancreatic Islet
49	chr7:79817200-79819600	Enhancers	Brain Anterior Caudate	brain
50	chr7:79817200-79820000	Weak transcription	NHLF	lung

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