Variant report

Variant	rs73378668
Chromosome Location	chr7:79806977-79806978
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17153514	0.90[AFR][1000 genomes]
rs17153546	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17153549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17153555	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73378647	0.90[AFR][1000 genomes]
rs73378654	0.90[AFR][1000 genomes]
rs73378656	0.90[AFR][1000 genomes]
rs73378659	0.95[AFR][1000 genomes]
rs73378663	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73378672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73378676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73378688	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73378694	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79789400-79814200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:79792800-79809000	Weak transcription	Fetal Kidney	kidney
3	chr7:79795400-79816000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr7:79795600-79809000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr7:79796400-79816000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr7:79801800-79840400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr7:79802400-79813200	Weak transcription	Placenta	Placenta
8	chr7:79802600-79807000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr7:79802600-79809000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr7:79802600-79820200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr7:79803000-79807200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr7:79803200-79807000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr7:79803200-79812000	Weak transcription	NHEK	skin
14	chr7:79803200-79812200	Weak transcription	Ovary	ovary
15	chr7:79803400-79807000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr7:79803400-79810000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr7:79803400-79811800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr7:79803400-79812000	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr7:79804400-79807200	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr7:79804800-79813200	Weak transcription	Left Ventricle	heart
21	chr7:79805400-79809000	Weak transcription	Fetal Lung	lung
22	chr7:79805800-79807200	Weak transcription	Colon Smooth Muscle	Colon
23	chr7:79805800-79807600	Weak transcription	Gastric	stomach
24	chr7:79806000-79810000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr7:79806000-79811200	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr7:79806000-79816000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr7:79806600-79807000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr7:79806600-79807200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr7:79806600-79807600	Enhancers	Primary T cells from cord blood	blood
30	chr7:79806600-79807600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr7:79806600-79807800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr7:79806600-79807800	Enhancers	NHDF-Ad	bronchial
33	chr7:79806600-79810000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr7:79806800-79807000	Weak transcription	A549	lung
35	chr7:79806800-79807200	Enhancers	H9 Cell Line	embryonic stem cell
36	chr7:79806800-79807200	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr7:79806800-79807200	Enhancers	Fetal Muscle Leg	muscle
38	chr7:79806800-79807200	Enhancers	Rectal Mucosa Donor 31	rectum
39	chr7:79806800-79807400	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr7:79806800-79807400	Enhancers	Primary hematopoietic stem cells	blood
41	chr7:79806800-79807400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr7:79806800-79807400	Enhancers	Adipose Nuclei	Adipose
43	chr7:79806800-79807400	Enhancers	Brain Angular Gyrus	brain
44	chr7:79806800-79807400	Enhancers	Brain Cingulate Gyrus	brain
45	chr7:79806800-79807600	Enhancers	iPS-20b Cell Line	embryonic stem cell
46	chr7:79806800-79810400	Enhancers	Brain Hippocampus Middle	brain
47	chr7:79806800-79810400	Enhancers	Pancreatic Islets	Pancreatic Islet
48	chr7:79806800-79814800	Enhancers	Brain Substantia Nigra	brain

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