Variant report

Variant	rs73378694
Chromosome Location	chr7:79828147-79828148
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:79826630..79828423-chr7:79838605..79841160,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17153546	1.00[EUR][1000 genomes]
rs17153549	1.00[EUR][1000 genomes]
rs17153555	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73378663	1.00[EUR][1000 genomes]
rs73378668	1.00[EUR][1000 genomes]
rs73378672	1.00[EUR][1000 genomes]
rs73378676	1.00[EUR][1000 genomes]
rs73378688	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79801800-79840400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr7:79807200-79829200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr7:79807200-79833400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr7:79807800-79842000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr7:79809600-79847600	Weak transcription	HUVEC	blood vessel
6	chr7:79811600-79845000	Weak transcription	Primary T cells from cord blood	blood
7	chr7:79812400-79828200	Weak transcription	HMEC	breast
8	chr7:79813400-79829000	Weak transcription	Fetal Muscle Leg	muscle
9	chr7:79814200-79842600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr7:79815000-79830600	Weak transcription	Placenta	Placenta
11	chr7:79815000-79848200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr7:79815000-79850200	Weak transcription	Lung	lung
13	chr7:79815200-79859600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr7:79816200-79846800	Weak transcription	Esophagus	oesophagus
15	chr7:79816400-79854800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:79816800-79830600	Weak transcription	Gastric	stomach
17	chr7:79816800-79831800	Weak transcription	Hela-S3	cervix
18	chr7:79817000-79828600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr7:79817000-79829800	Weak transcription	Osteobl	bone
20	chr7:79817000-79830600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr7:79817000-79833000	Weak transcription	HSMM	muscle
22	chr7:79817000-79841000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr7:79817000-79842400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr7:79817000-79851200	Weak transcription	Aorta	Aorta
25	chr7:79817200-79828400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr7:79817200-79829200	Weak transcription	Fetal Brain Female	brain
27	chr7:79817200-79829200	Weak transcription	Fetal Stomach	stomach
28	chr7:79817400-79828600	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr7:79817400-79828800	Weak transcription	Fetal Kidney	kidney
30	chr7:79817400-79829200	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr7:79817600-79829200	Weak transcription	Fetal Muscle Trunk	muscle
32	chr7:79819000-79833200	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr7:79819200-79830200	Weak transcription	Liver	Liver
34	chr7:79819400-79828600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr7:79820600-79829800	Weak transcription	Fetal Brain Male	brain
36	chr7:79820600-79830000	Weak transcription	NHDF-Ad	bronchial
37	chr7:79820600-79847000	Weak transcription	NHLF	lung
38	chr7:79820600-79853800	Weak transcription	Left Ventricle	heart
39	chr7:79821000-79829000	Weak transcription	Ovary	ovary
40	chr7:79821000-79829800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr7:79821200-79828600	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr7:79821400-79832800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr7:79822600-79828600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr7:79823000-79828600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr7:79824800-79828600	Enhancers	Pancreatic Islets	Pancreatic Islet
46	chr7:79825000-79847400	Weak transcription	Pancreas	Pancrea
47	chr7:79825200-79844000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr7:79825400-79828400	Weak transcription	Brain Anterior Caudate	brain
49	chr7:79825400-79828800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr7:79825400-79856600	Weak transcription	H1 Cell Line	embryonic stem cell

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