Variant report

Variant	rs17155813
Chromosome Location	chr7:27810618-27810619
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27784901..27786438-chr7:27809644..27811195,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10486560	0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11981473	0.87[AMR][1000 genomes]
rs11981639	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11982051	0.85[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17155661	0.87[AMR][1000 genomes]
rs17155671	0.87[AMR][1000 genomes]
rs17155769	0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17155774	0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17155787	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17155812	0.85[AMR][1000 genomes]
rs17155815	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17155818	0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs4299908	0.87[AMR][1000 genomes]
rs56820008	0.85[AMR][1000 genomes]
rs57293935	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs58787573	0.85[AMR][1000 genomes]
rs59134341	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs60524058	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs60811898	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs61226834	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6462046	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6942560	0.87[AMR][1000 genomes]
rs6952476	0.87[AMR][1000 genomes]
rs6957673	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6958438	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6958646	0.87[AMR][1000 genomes]
rs6963125	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6969000	0.91[AFR][1000 genomes]
rs6978092	0.85[AMR][1000 genomes]
rs73293835	0.87[AMR][1000 genomes]
rs73293838	0.87[AMR][1000 genomes]
rs73293842	0.87[AMR][1000 genomes]
rs73293856	0.87[AMR][1000 genomes]
rs73293862	0.87[AMR][1000 genomes]
rs73293868	0.87[AMR][1000 genomes]
rs73293882	0.87[AMR][1000 genomes]
rs73293893	0.87[AMR][1000 genomes]
rs73295504	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73295543	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73295545	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73295567	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73297523	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73297535	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7783141	0.87[AMR][1000 genomes]
rs7783426	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7803672	0.88[YRI][hapmap];0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1028469	chr7:27767795-27939667	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv2758109	chr7:27793616-27972869	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	esv2759520	chr7:27793616-27972869	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27780800-27815200	Weak transcription	Gastric	stomach
2	chr7:27781000-27861800	Weak transcription	Aorta	Aorta
3	chr7:27781400-27812800	Weak transcription	Brain Germinal Matrix	brain
4	chr7:27784800-27834000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:27784800-27878400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr7:27785000-27825000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr7:27787600-27825000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr7:27787800-27826600	Weak transcription	Small Intestine	intestine
9	chr7:27789600-27811000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr7:27790200-27815200	Weak transcription	Psoas Muscle	Psoas
11	chr7:27790600-27825000	Weak transcription	NHLF	lung
12	chr7:27790600-27835000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr7:27790600-27857400	Weak transcription	Colonic Mucosa	Colon
14	chr7:27792200-27825000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr7:27792200-27825000	Weak transcription	Brain Hippocampus Middle	brain
16	chr7:27792400-27822600	Weak transcription	HSMMtube	muscle
17	chr7:27792800-27825200	Weak transcription	Lung	lung
18	chr7:27796600-27819400	Weak transcription	Fetal Heart	heart
19	chr7:27798400-27817000	Weak transcription	Brain Anterior Caudate	brain
20	chr7:27798400-27817000	Weak transcription	Brain Substantia Nigra	brain
21	chr7:27798600-27810800	Weak transcription	HUVEC	blood vessel
22	chr7:27798600-27822200	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr7:27798600-27847800	Weak transcription	Rectal Smooth Muscle	rectum
24	chr7:27798600-27874000	Weak transcription	Brain Angular Gyrus	brain
25	chr7:27801200-27825200	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr7:27801200-27851800	Weak transcription	Fetal Brain Male	brain
27	chr7:27801400-27831400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr7:27801400-27838400	Weak transcription	Fetal Brain Female	brain
29	chr7:27801600-27815200	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr7:27801600-27852800	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr7:27801800-27825200	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr7:27802800-27826200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr7:27804000-27811000	Weak transcription	NH-A	brain
34	chr7:27804400-27811000	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr7:27804600-27824400	Weak transcription	Fetal Intestine Small	intestine
36	chr7:27805000-27812000	Strong transcription	Dnd41	blood
37	chr7:27805000-27813200	Strong transcription	Primary monocytes fromperipheralblood	blood
38	chr7:27805000-27816000	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr7:27805200-27813000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr7:27805400-27811800	Strong transcription	HUES48 Cell Line	embryonic stem cell
41	chr7:27805400-27811800	Strong transcription	Placenta	Placenta
42	chr7:27805400-27812000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr7:27805800-27810800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr7:27805800-27825200	Weak transcription	Fetal Muscle Trunk	muscle
45	chr7:27805800-27832200	Weak transcription	Fetal Stomach	stomach
46	chr7:27805800-27857600	Weak transcription	Esophagus	oesophagus
47	chr7:27806000-27882600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr7:27806400-27811000	Weak transcription	Ovary	ovary
49	chr7:27806400-27815200	Weak transcription	Pancreas	Pancrea
50	chr7:27806400-27825000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links