Variant report

Variant	rs17155671
Chromosome Location	chr7:27749398-27749399
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:27747436..27749954-chr7:27752214..27754351,3	K562	blood:
2	chr7:27748144..27751771-chr7:27755375..27758191,3	K562	blood:
3	chr7:27747506..27749954-chr7:27752851..27754917,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10486560	0.90[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11981473	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11981639	1.00[AMR][1000 genomes]
rs11982051	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17155661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17155769	0.90[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17155774	0.90[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17155787	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17155813	0.87[AMR][1000 genomes]
rs17155815	0.87[AMR][1000 genomes]
rs17155818	0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs4299908	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4722731	0.94[AFR][1000 genomes]
rs57293935	1.00[AMR][1000 genomes]
rs57355732	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs59134341	1.00[AMR][1000 genomes]
rs60524058	1.00[AMR][1000 genomes]
rs60811898	1.00[AMR][1000 genomes]
rs61226834	1.00[AMR][1000 genomes]
rs6462046	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6942560	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6952476	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6958438	1.00[AMR][1000 genomes]
rs6958646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6963125	1.00[AMR][1000 genomes]
rs6969000	0.89[AMR][1000 genomes]
rs73293835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293842	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293845	0.83[AFR][1000 genomes]
rs73293856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293862	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293868	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293882	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293888	0.91[AFR][1000 genomes]
rs73293893	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73295504	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73295519	0.89[AMR][1000 genomes]
rs73295543	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73295545	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73295567	1.00[AMR][1000 genomes]
rs73297523	1.00[AMR][1000 genomes]
rs73297535	1.00[AMR][1000 genomes]
rs7783141	1.00[AMR][1000 genomes]
rs7783426	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7803672	0.89[YRI][hapmap];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27748600-27750000	Enhancers	Hela-S3	cervix
2	chr7:27748600-27750000	Enhancers	Osteobl	bone
3	chr7:27748600-27750200	Enhancers	NHDF-Ad	bronchial
4	chr7:27748800-27749400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:27748800-27749400	Enhancers	Adipose Nuclei	Adipose
6	chr7:27748800-27749600	Enhancers	HMEC	breast
7	chr7:27748800-27749800	Enhancers	Ovary	ovary
8	chr7:27748800-27749800	Enhancers	NHLF	lung
9	chr7:27748800-27750000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr7:27748800-27750000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr7:27748800-27750000	Enhancers	Colon Smooth Muscle	Colon
12	chr7:27748800-27750000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr7:27748800-27750000	Enhancers	NH-A	brain
14	chr7:27749000-27749400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr7:27749000-27749400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr7:27749000-27749400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
17	chr7:27749000-27749400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr7:27749000-27749400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr7:27749000-27749800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr7:27749000-27749800	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr7:27749000-27749800	Enhancers	Stomach Smooth Muscle	stomach
22	chr7:27749000-27749800	Enhancers	HSMMtube	muscle
23	chr7:27749000-27750000	Enhancers	HSMM	muscle
24	chr7:27749000-27750000	Enhancers	HUVEC	blood vessel
25	chr7:27749000-27750200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr7:27749000-27750200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr7:27749000-27750200	Enhancers	K562	blood
28	chr7:27749200-27749400	Enhancers	Small Intestine	intestine

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