Variant report

Variant	rs73293888
Chromosome Location	chr7:27773497-27773498
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10486560	0.87[AFR][1000 genomes]
rs11981473	0.94[AFR][1000 genomes]
rs11981639	0.81[AFR][1000 genomes]
rs11982051	0.87[AFR][1000 genomes]
rs17155661	0.91[AFR][1000 genomes]
rs17155671	0.91[AFR][1000 genomes]
rs17155769	0.87[AFR][1000 genomes]
rs17155774	0.87[AFR][1000 genomes]
rs17155787	0.87[AFR][1000 genomes]
rs17155818	0.81[AFR][1000 genomes]
rs4299908	0.91[AFR][1000 genomes]
rs4722731	0.86[AFR][1000 genomes]
rs57293935	0.81[AFR][1000 genomes]
rs57355732	0.91[AFR][1000 genomes]
rs6462046	0.87[AFR][1000 genomes]
rs6942560	0.88[AFR][1000 genomes]
rs6952476	0.97[AFR][1000 genomes]
rs6958438	0.81[AFR][1000 genomes]
rs6958646	0.91[AFR][1000 genomes]
rs6963125	0.81[AFR][1000 genomes]
rs6969000	0.81[AFR][1000 genomes]
rs73293835	0.91[AFR][1000 genomes]
rs73293838	0.91[AFR][1000 genomes]
rs73293842	0.91[AFR][1000 genomes]
rs73293856	0.91[AFR][1000 genomes]
rs73293862	0.89[AFR][1000 genomes]
rs73293868	0.94[AFR][1000 genomes]
rs73293882	0.97[AFR][1000 genomes]
rs73293893	0.97[AFR][1000 genomes]
rs73295504	0.87[AFR][1000 genomes]
rs73295543	0.87[AFR][1000 genomes]
rs73295545	0.87[AFR][1000 genomes]
rs73295567	0.81[AFR][1000 genomes]
rs7783426	0.87[AFR][1000 genomes]
rs7803672	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1028469	chr7:27767795-27939667	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27760000-27778800	Weak transcription	HSMMtube	muscle
2	chr7:27770000-27778600	Weak transcription	Right Atrium	heart
3	chr7:27770600-27775400	Weak transcription	Pancreas	Pancrea
4	chr7:27771000-27773800	Weak transcription	K562	blood
5	chr7:27771200-27775400	Weak transcription	Gastric	stomach
6	chr7:27772800-27778800	Enhancers	Fetal Intestine Small	intestine
7	chr7:27773000-27776000	Enhancers	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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