Variant report

Variant	rs10486560
Chromosome Location	chr7:27788036-27788037
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:27785850..27788466-chr7:27796685..27798501,2	K562	blood:
2	chr7:27787733..27790023-chr7:27790214..27791778,2	MCF-7	breast:
3	chr7:27785977..27788365-chr7:27790944..27793123,2	K562	blood:
4	chr7:27784788..27787305-chr7:27787434..27789144,2	K562	blood:
5	chr7:27784566..27786951-chr7:27787434..27790221,3	K562	blood:
6	chr7:27786993..27792954-chr7:27793164..27797918,6	K562	blood:
7	chr7:27777249..27781364-chr7:27781538..27788730,11	MCF-7	breast:
8	chr7:27701253..27703546-chr7:27787214..27789983,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000106049	Chromatin interaction
ENSG00000229893	Chromatin interaction
ENSG00000106052	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11981473	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11981639	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11982051	0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17155661	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17155671	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17155769	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17155774	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17155787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17155813	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17155815	0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17155818	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4299908	0.88[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57293935	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57355732	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs59134341	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60524058	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60811898	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61226834	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6462046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6942560	0.90[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6952476	0.88[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6958438	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6958646	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6963125	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6969000	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73293835	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293838	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293842	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293856	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293862	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293868	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293882	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293888	0.87[AFR][1000 genomes]
rs73293893	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73295504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73295519	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73295543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73295545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73295567	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73297523	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73297535	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7783141	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7783426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7803672	1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1028469	chr7:27767795-27939667	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27780800-27788800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:27780800-27789400	Weak transcription	Lung	lung
3	chr7:27780800-27796400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:27780800-27805600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:27780800-27810200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr7:27780800-27815200	Weak transcription	Gastric	stomach
7	chr7:27781000-27789000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr7:27781000-27800200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr7:27781000-27861800	Weak transcription	Aorta	Aorta
10	chr7:27781200-27788400	Weak transcription	Brain Hippocampus Middle	brain
11	chr7:27781200-27788800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr7:27781200-27789000	Weak transcription	Fetal Thymus	thymus
13	chr7:27781200-27789400	Weak transcription	Thymus	Thymus
14	chr7:27781200-27789600	Weak transcription	Fetal Brain Female	brain
15	chr7:27781200-27790200	Weak transcription	Fetal Brain Male	brain
16	chr7:27781200-27791800	Weak transcription	Right Ventricle	heart
17	chr7:27781200-27792000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr7:27781400-27789400	Weak transcription	Fetal Muscle Leg	muscle
19	chr7:27781400-27789600	Weak transcription	Esophagus	oesophagus
20	chr7:27781400-27799600	Weak transcription	Fetal Stomach	stomach
21	chr7:27781400-27803200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr7:27781400-27812800	Weak transcription	Brain Germinal Matrix	brain
23	chr7:27782400-27788200	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr7:27782400-27788200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr7:27782400-27788200	Weak transcription	Placenta	Placenta
26	chr7:27784800-27789000	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr7:27784800-27789000	Weak transcription	Colonic Mucosa	Colon
28	chr7:27784800-27789200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr7:27784800-27789200	Weak transcription	HSMMtube	muscle
30	chr7:27784800-27790400	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr7:27784800-27799200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr7:27784800-27801000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr7:27784800-27834000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr7:27784800-27878400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr7:27785000-27788200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr7:27785000-27788200	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr7:27785000-27788200	Weak transcription	Duodenum Mucosa	Duodenum
38	chr7:27785000-27788200	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr7:27785000-27788200	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr7:27785000-27788200	Weak transcription	Dnd41	blood
41	chr7:27785000-27788200	Weak transcription	NH-A	brain
42	chr7:27785000-27788400	Weak transcription	GM12878-XiMat	blood
43	chr7:27785000-27788600	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr7:27785000-27788800	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr7:27785000-27788800	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr7:27785000-27788800	Weak transcription	NHEK	skin
47	chr7:27785000-27789800	Weak transcription	Primary hematopoietic stem cells	blood
48	chr7:27785000-27789800	Weak transcription	Brain Angular Gyrus	brain
49	chr7:27785000-27793200	Weak transcription	Fetal Heart	heart
50	chr7:27785000-27805600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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