Variant report

Variant	rs4299908
Chromosome Location	chr7:27756601-27756602
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:27755881..27758481-chr7:27759266..27761772,2	MCF-7	breast:
2	chr7:27702223..27704529-chr7:27754263..27757041,2	K562	blood:
3	chr7:27754406..27757331-chr7:27767738..27770016,2	K562	blood:
4	chr7:27748144..27751771-chr7:27755375..27758191,3	K562	blood:

Variant related genes	Relation type
ENSG00000106049	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10486560	0.88[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11981473	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11981639	1.00[AMR][1000 genomes]
rs11982051	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17155661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17155671	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17155769	0.89[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17155774	0.89[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17155787	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17155813	0.87[AMR][1000 genomes]
rs17155815	0.87[AMR][1000 genomes]
rs17155818	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs4722731	0.94[AFR][1000 genomes]
rs57293935	1.00[AMR][1000 genomes]
rs57355732	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs59134341	1.00[AMR][1000 genomes]
rs60524058	1.00[AMR][1000 genomes]
rs60811898	1.00[AMR][1000 genomes]
rs61226834	1.00[AMR][1000 genomes]
rs6462046	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6942560	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6952476	1.00[ASW][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6958438	1.00[AMR][1000 genomes]
rs6958646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6963125	1.00[AMR][1000 genomes]
rs6969000	0.89[AMR][1000 genomes]
rs73293835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293842	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293845	0.83[AFR][1000 genomes]
rs73293856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293862	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293868	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293882	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293888	0.91[AFR][1000 genomes]
rs73293893	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73295504	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73295519	0.89[AMR][1000 genomes]
rs73295543	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73295545	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73295567	1.00[AMR][1000 genomes]
rs73297523	1.00[AMR][1000 genomes]
rs73297535	1.00[AMR][1000 genomes]
rs7783141	1.00[AMR][1000 genomes]
rs7783426	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7803672	0.95[LWK][hapmap];1.00[MEX][hapmap];0.89[YRI][hapmap];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27751200-27756800	Enhancers	HepG2	liver
2	chr7:27754800-27758800	Weak transcription	Gastric	stomach
3	chr7:27755000-27757800	Weak transcription	Fetal Lung	lung
4	chr7:27755200-27758000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr7:27755200-27762200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:27755200-27762800	Weak transcription	Brain Angular Gyrus	brain
7	chr7:27755400-27757800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr7:27755600-27758800	Weak transcription	Fetal Intestine Large	intestine
9	chr7:27756400-27756800	Enhancers	Brain Germinal Matrix	brain
10	chr7:27756400-27756800	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr7:27756400-27758000	Weak transcription	Fetal Intestine Small	intestine
12	chr7:27756600-27756800	Enhancers	Brain Substantia Nigra	brain
13	chr7:27756600-27762800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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