Variant report

Variant	rs17157128
Chromosome Location	chr7:103538333-103538334
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:103537933..103539744-chr7:103542239..103544232,2	K562	blood:
2	chr7:103538244..103539746-chr7:103542732..103544465,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10216302	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10230894	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10238729	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10246378	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10246821	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10254052	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10267445	0.81[YRI][hapmap]
rs10458286	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10458287	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12669883	0.82[CEU][hapmap];0.80[YRI][hapmap]
rs17157125	1.00[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.89[MEX][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes]
rs17157144	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28376312	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28422835	0.99[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3857817	0.91[EUR][1000 genomes]
rs4125502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55917011	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58130032	0.96[EUR][1000 genomes]
rs67193600	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73183735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73183737	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73183741	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9656085	0.80[ASW][hapmap];0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1843940	chr7:103421702-103590285	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs17157128	PLOD3	cis	cerebellum	SCAN
rs17157128	CYP3A43	cis	cerebellum	SCAN
rs17157128	GAL3ST4	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103531200-103546000	Weak transcription	HepG2	liver
2	chr7:103537000-103543000	Weak transcription	K562	blood

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