Variant report

Variant	rs58130032
Chromosome Location	chr7:103537912-103537913
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10216302	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10230894	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10238729	0.91[EUR][1000 genomes]
rs10246378	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10246821	0.86[EUR][1000 genomes]
rs10254052	0.91[EUR][1000 genomes]
rs10458283	0.87[AFR][1000 genomes]
rs10458285	0.84[AFR][1000 genomes]
rs10458286	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10458287	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17157125	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17157128	0.96[EUR][1000 genomes]
rs17157144	0.93[EUR][1000 genomes]
rs28376312	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28422835	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3857817	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3898842	0.87[AFR][1000 genomes]
rs3907884	0.87[AFR][1000 genomes]
rs4125502	0.93[EUR][1000 genomes]
rs4125503	0.87[AFR][1000 genomes]
rs55917011	0.91[EUR][1000 genomes]
rs58098888	0.87[AFR][1000 genomes]
rs58315603	0.86[AFR][1000 genomes]
rs59561019	0.87[AFR][1000 genomes]
rs60648014	0.85[AFR][1000 genomes]
rs60944865	0.85[AFR][1000 genomes]
rs67193600	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6964065	0.88[ASN][1000 genomes]
rs73183735	0.93[EUR][1000 genomes]
rs73183737	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1843940	chr7:103421702-103590285	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103531200-103546000	Weak transcription	HepG2	liver
2	chr7:103537000-103543000	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links