Variant report
| Variant | rs3857817 |
|---|---|
| Chromosome Location | chr7:103539478-103539479 |
| allele | A/C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10216302 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs10230894 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs10238729 | 0.93[EUR][1000 genomes] |
| rs10246378 | 0.85[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs10246821 | 0.88[EUR][1000 genomes] |
| rs10254052 | 0.93[EUR][1000 genomes] |
| rs10458283 | 0.95[AFR][1000 genomes] |
| rs10458285 | 0.92[AFR][1000 genomes] |
| rs10458286 | 0.82[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs10458287 | 0.80[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs17157125 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs17157128 | 0.91[EUR][1000 genomes] |
| rs17157144 | 0.95[EUR][1000 genomes] |
| rs28376312 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs28422835 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs3898842 | 0.95[AFR][1000 genomes] |
| rs3907884 | 0.95[AFR][1000 genomes] |
| rs4125502 | 0.95[EUR][1000 genomes] |
| rs4125503 | 0.95[AFR][1000 genomes] |
| rs55917011 | 0.93[EUR][1000 genomes] |
| rs58098888 | 0.95[AFR][1000 genomes] |
| rs58130032 | 0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs58315603 | 0.92[AFR][1000 genomes] |
| rs59561019 | 0.95[AFR][1000 genomes] |
| rs60648014 | 0.93[AFR][1000 genomes] |
| rs60944865 | 0.93[AFR][1000 genomes] |
| rs67193600 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs73183735 | 0.95[EUR][1000 genomes] |
| rs73183737 | 0.91[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1843940 | chr7:103421702-103590285 | Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:103531200-103546000 | Weak transcription | HepG2 | liver |
| 2 | chr7:103537000-103543000 | Weak transcription | K562 | blood |
