Variant report

Variant	rs17158168
Chromosome Location	chr15:83565711-83565712
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:83564369..83566248-chr15:83586818..83589163,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1002881	0.88[JPT][hapmap];0.92[MEX][hapmap]
rs11259954	0.82[JPT][hapmap]
rs12101624	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1256424	0.88[JPT][hapmap]
rs1256426	0.94[JPT][hapmap]
rs1588546	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.96[ASN][1000 genomes]
rs17158194	0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.92[MEX][hapmap];0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17841162	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17841163	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2127648	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2306428	0.85[CHB][hapmap];0.94[JPT][hapmap];0.84[LWK][hapmap];0.92[MEX][hapmap];0.86[AMR][1000 genomes]
rs2667377	0.83[JPT][hapmap]
rs2667378	0.88[JPT][hapmap]
rs3784365	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3784366	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56686717	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7174216	0.94[ASN][1000 genomes]
rs7174726	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8030940	0.88[ASW][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];0.84[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522673	chr15:83565711-83570114	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17158168	TM6SF1	cis	lymphoblastoid	seeQTL

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83524600-83567800	Weak transcription	Left Ventricle	heart
2	chr15:83540600-83573200	Weak transcription	Right Atrium	heart
3	chr15:83541000-83566200	Weak transcription	Spleen	Spleen
4	chr15:83542400-83567200	Weak transcription	Brain Angular Gyrus	brain
5	chr15:83543600-83567600	Weak transcription	Aorta	Aorta
6	chr15:83558400-83569600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr15:83558600-83566600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr15:83558600-83567800	Weak transcription	Psoas Muscle	Psoas
9	chr15:83559600-83570200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr15:83560400-83570200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr15:83561400-83566200	Weak transcription	Liver	Liver
12	chr15:83564200-83569400	Weak transcription	HepG2	liver
13	chr15:83564400-83566400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr15:83564400-83566600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr15:83564400-83568000	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr15:83564400-83569400	Weak transcription	Brain Hippocampus Middle	brain
17	chr15:83564400-83569600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr15:83564400-83569800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr15:83564600-83566600	Weak transcription	Colon Smooth Muscle	Colon
20	chr15:83564600-83569400	Weak transcription	HSMM	muscle
21	chr15:83565000-83566200	Genic enhancers	Pancreas	Pancrea
22	chr15:83565000-83566600	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr15:83565200-83565800	Enhancers	Gastric	stomach
24	chr15:83565400-83567800	Weak transcription	Fetal Muscle Trunk	muscle
25	chr15:83565400-83568800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr15:83565600-83566000	Weak transcription	HSMMtube	muscle
27	chr15:83565600-83567800	Weak transcription	Fetal Muscle Leg	muscle

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