Variant report

Variant	rs7174726
Chromosome Location	chr15:83563759-83563760
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:83558288..83561120-chr15:83563049..83565497,2	MCF-7	breast:
2	chr15:83550326..83552965-chr15:83562801..83565043,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1002881	0.87[JPT][hapmap]
rs11259954	0.81[JPT][hapmap]
rs12101624	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1256424	0.88[JPT][hapmap]
rs1256426	0.88[JPT][hapmap]
rs1588546	0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17158168	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17158194	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17841162	0.92[ASN][1000 genomes]
rs17841163	0.92[ASN][1000 genomes]
rs17841165	0.80[JPT][hapmap]
rs2127648	0.92[ASN][1000 genomes]
rs2306428	0.93[JPT][hapmap]
rs2667377	0.82[JPT][hapmap]
rs2667378	0.87[JPT][hapmap]
rs3784365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3784366	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56686717	0.88[ASN][1000 genomes]
rs7174216	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs8030940	0.92[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83520000-83563800	Weak transcription	Brain Hippocampus Middle	brain
2	chr15:83524600-83567800	Weak transcription	Left Ventricle	heart
3	chr15:83524800-83563800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr15:83540600-83573200	Weak transcription	Right Atrium	heart
5	chr15:83541000-83566200	Weak transcription	Spleen	Spleen
6	chr15:83542400-83564000	Weak transcription	Lung	lung
7	chr15:83542400-83567200	Weak transcription	Brain Angular Gyrus	brain
8	chr15:83543600-83567600	Weak transcription	Aorta	Aorta
9	chr15:83544000-83563800	Weak transcription	Brain Anterior Caudate	brain
10	chr15:83554400-83564000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:83556000-83563800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr15:83556800-83563800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr15:83557400-83563800	Weak transcription	Brain Substantia Nigra	brain
14	chr15:83558000-83563800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr15:83558200-83563800	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr15:83558200-83563800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr15:83558200-83563800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr15:83558200-83564000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr15:83558200-83565000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr15:83558400-83569600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr15:83558600-83566600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr15:83558600-83567800	Weak transcription	Psoas Muscle	Psoas
23	chr15:83559200-83563800	Weak transcription	Fetal Stomach	stomach
24	chr15:83559600-83563800	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr15:83559600-83570200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr15:83560000-83563800	Weak transcription	Colon Smooth Muscle	Colon
27	chr15:83560200-83563800	Weak transcription	Fetal Muscle Leg	muscle
28	chr15:83560400-83563800	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr15:83560400-83564200	Weak transcription	HSMMtube	muscle
30	chr15:83560400-83570200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr15:83560600-83563800	Weak transcription	Pancreas	Pancrea
32	chr15:83560600-83563800	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr15:83560600-83565200	Weak transcription	Gastric	stomach
34	chr15:83561400-83566200	Weak transcription	Liver	Liver
35	chr15:83561800-83564200	Weak transcription	Brain Germinal Matrix	brain
36	chr15:83562800-83564600	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr15:83563600-83564000	Enhancers	Rectal Smooth Muscle	rectum
38	chr15:83563600-83564000	Enhancers	NH-A	brain
39	chr15:83563600-83564200	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr15:83563600-83564400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr15:83563600-83564400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr15:83563600-83564400	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr15:83563600-83564400	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr15:83563600-83564400	Enhancers	HUES64 Cell Line	embryonic stem cell
45	chr15:83563600-83564400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr15:83563600-83564600	Enhancers	ES-I3 Cell Line	embryonic stem cell
47	chr15:83563600-83564600	Enhancers	Muscle Satellite Cultured Cells	--
48	chr15:83563600-83564600	Enhancers	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links